Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b15f
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 151 4e-37
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 90 4e-24
03_04_0184 - 18210875-18212065 29 2.4
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 3.2
08_02_0636 + 19567654-19568859 29 4.2
04_04_1582 - 34590698-34591199,34593849-34594690 29 4.2
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 5.6
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 28 5.6
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 28 5.6
10_08_0223 - 15986763-15987575 28 7.4
05_01_0078 - 523366-525196,525622-525675,527135-529341 27 9.8
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 27 9.8
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 27 9.8
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 151 bits (367), Expect = 4e-37
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = +3
Query: 123 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 302
P GN + G+KIF +CAQCHTV+ G HK GPNL+G FGR++G G+SYS ANK +
Sbjct: 8 PPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVI 67
Query: 303 WNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 434
W ++TL++YL NPKKYIPGTKMVF GLKK ERADLI+YLK AT
Sbjct: 68 WEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 89.8 bits (213), Expect(2) = 4e-24
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = +3
Query: 123 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 302
P G+A G+KIF +CA CH V+ HK GPNL+G FGR++G A GFSY +K +
Sbjct: 8 PPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVI 67
Query: 303 WNDDTLFEYLENPKKY 350
W ++TL++YL PKK+
Sbjct: 68 WEENTLYDYLLTPKKH 83
Score = 39.5 bits (88), Expect(2) = 4e-24
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 345 KYIPGTKMVFAGLKKANERADLIAYLKSAT 434
KY P KM F GLK+ +RADLIAYLK+AT
Sbjct: 117 KYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145
>03_04_0184 - 18210875-18212065
Length = 396
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 540 AEYITDHTDWAK*EVDSRNVMENASYGIFYYFKITW*QI*DR 415
A+ I +H WA E ++N N S G Y +K+ W + D+
Sbjct: 258 ADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 241 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSL 357
+ L RLQDS TP P+K + L+ N+ P TS+
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSV 342
>08_02_0636 + 19567654-19568859
Length = 401
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +2
Query: 341 QEIHPWNQDGIC-WTQEGK 394
QE+ PW++DG+C W E K
Sbjct: 358 QEVFPWSRDGLCPWKYETK 376
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 192 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPG 359
AGG K G G G G+ S+ + KGI W +D +L +KY G
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKYGKG 293
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 220 FG-PTLCLPPASTVWHWA 170
FG PTLCLPP +T W A
Sbjct: 21 FGMPTLCLPPIATYWSHA 38
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 397 SFAFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLASEYEN 263
SF P N LVP Y+ G+ R K + ++P+ +++ N
Sbjct: 207 SFCLADPGNAFLVPSPYYPGWDRDIKWRTGIELIPVPCRSTDNFN 251
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 MDSLAEKLARLQDSHTP-MPIKLRALHGMTTLSLNILRIPRNTSLEPRWYLLD 381
+D +A+ A DSH+P +P+ L LHG + ++ +P S W L D
Sbjct: 818 VDGIADYCAL--DSHSPAVPLHLVELHGSLCMVRDLRHLPHGESCLEIWALRD 868
>10_08_0223 - 15986763-15987575
Length = 270
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 195 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 308
GG G +G +G +G AG Y ++ G TWN
Sbjct: 40 GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 493 IYFLFSPISMISYVFSNVTI 552
+YF+ P M++Y FSN TI
Sbjct: 1069 LYFVACPFEMVTYYFSNKTI 1088
>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/38 (23%), Positives = 26/38 (68%)
Frame = +2
Query: 479 ITFLESTSYLAQSV*SVMYSAMLQLHYNIKVFVSSKSQ 592
ITF + + ++ ++ + + A+ +H+NI+ F+S++++
Sbjct: 1060 ITFYQHYNSISIAICLIYHGAVFNIHFNIRCFLSAETK 1097
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 537 QQCYNCTIILKYLLVPNHNTIICSCCL*IHMYLVHNV 647
++C NC + + N T IC C IH H V
Sbjct: 24 RKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHRV 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,450
Number of Sequences: 37544
Number of extensions: 379896
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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