Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b14f
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.71 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   3.8  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   6.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.7  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.7  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 61  LHNYIIIKHAQYCYGHKTIKTA 126
           +HN II   A   YGH++IKTA
Sbjct: 484 IHNRIIASMAPSIYGHRSIKTA 505


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 206  LMNGSYTSIMNKQDLLREVVVKYIDYFYP 292
            LM       +  +DLLR VV+KYID+  P
Sbjct: 1384 LMRLKDLEFLETKDLLRHVVLKYIDHTNP 1412


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 277 YVLDDDLSE*ILLVHDGRVASIHQFRLHRSHFFYGFSRYGTFASRLW 137
           Y+      E   L H GR    H F LH  + +Y  S +G  AS L+
Sbjct: 651 YLYGSPFLEHTYLYHFGRTDHRHNFSLHHLNLYYE-SSFGAKASSLF 696


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 198 CIVPTSSTGFHGTGLSRPGYGI*WSRFDCFV 106
           C+V    +G+HG  L+ P   I    FD FV
Sbjct: 48  CLVGYCGSGYHGMQLNPPSKTIEGDLFDAFV 78


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 329  KIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 469
            ++ Q +  +KS L   V+ + E L+   A+   +I QLE++NT L A
Sbjct: 1335 ELNQEIGHLKSELE-TVKSKSEDLENERAQNQSKIEQLELKNTKLAA 1380


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +2

Query: 338 QAMDLVKSHLMFAVREEVEVLKERIAELMERI----TQLEV-ENTYLRAHASQDTLAQLP 502
           ++ ++ K  L   VR+E+  +KE+I  L ERI    T++ V EN   +    +DTL  L 
Sbjct: 35  ESREIEKKRLQ-KVRKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSKFRDTLQSLQ 93

Query: 503 AAQGN 517
           + + +
Sbjct: 94  SDEND 98


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 323  DNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 469
            D + EQA+   K  L+      VEV+ ER++ L  ++T  + +  +L A
Sbjct: 875  DLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIADEKYEFLYA 923


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 253  E*ILLVHDGRVASIHQFRLHRSHFFYGFSRYGTFASRLWDLMEPF 119
            E +++ HDGR+++ +   L +    +G S Y  F++   + + PF
Sbjct: 1183 ENLMIPHDGRISAFYIASLQKYFVKHGLSPY-AFSTVYSNCLNPF 1226


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 329 KIEQAMDLVKSHLMFAVREEVEV----LKERIAELMERITQLEVENTYLR 466
           ++++A D ++   +F    ++++    +KE++ E    I+Q EVE T LR
Sbjct: 705 QVQEAEDALERERLFREINDLQIQNAEMKEQVYEKESTISQKEVEITSLR 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,612
Number of Sequences: 5004
Number of extensions: 38510
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)