Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b14f
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196...    33   0.24 
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824...    31   0.73 
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    30   1.7  
03_02_0350 - 7734494-7734952,7735765-7736133                           27   8.9  

>07_03_0327 +
           16817149-16817438,16818029-16818224,16818309-16819642,
           16819925-16820097,16820257-16820503,16820599-16820893,
           16820934-16820982,16821357-16821562
          Length = 929

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 320 IDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQL 499
           I +K++ A     ++++  VR +  +    + E +   T+      Y   +  QD LAQ 
Sbjct: 223 IPSKLDAARSGTSANIIVVVRTDYSISASDLGEHLFNWTRTSFTANYYARYGHQDMLAQS 282

Query: 500 PAAQGNKPAAQPQ-PPV 547
              +GN P  + + PP+
Sbjct: 283 SCLRGNIPCIRTEGPPI 299


>11_04_0441 +
           17781533-17781775,17782007-17782114,17782386-17782471,
           17782546-17782807,17782921-17783120,17783770-17784012,
           17784118-17784394,17784625-17784759,17784880-17784960,
           17785311-17785406,17785661-17785756,17785834-17785890,
           17785967-17786035,17786154-17786240,17786534-17786635,
           17786730-17786819,17786900-17786980,17787573-17787653,
           17787761-17787856,17787937-17787993,17788093-17788137,
           17788218-17788346
          Length = 906

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 218 SYTSIMNKQDLLREVVVKYIDYFYPLASGTSAVAIDNKIEQAMDLVKSHLMFAVREE-VE 394
           SY+++     LL  +++K + Y + L +   A  +  K+E A  ++++   F + EE  E
Sbjct: 216 SYSTLFALLPLLLPLLLKLLQYVHSLWTDEVASNVSEKLEGAKFIIQAEKPFGIIEETTE 275

Query: 395 VLKERIAELME 427
           +L     EL+E
Sbjct: 276 MLDMNEEELLE 286


>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 383 EEVEVLKERIAELMERITQLEVENTYLRAHASQ 481
           +EV  LK+ + +  E+I  LE+ N  LR H  Q
Sbjct: 231 QEVHSLKQLVLQYQEQIKTLEINNYALRVHLKQ 263


>03_02_0350 - 7734494-7734952,7735765-7736133
          Length = 275

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +2

Query: 377 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKPAAQPQPPV 547
           +R+ V      I  L +++  L+ E TYL+AH +  TL +LP+     P A PQ P+
Sbjct: 106 LRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLA--TL-ELPSPPPLMP-APPQMPM 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,879,315
Number of Sequences: 37544
Number of extensions: 292572
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)