Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b14f
         (615 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.64 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.64 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    27   0.64 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.6  

>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 403 LQYLDFFAHREHQVALNQIHSLLDLVVDGHRAGA*CERVEVV 278
           L YL +F +    + +NQ  +++D  +   RA   C R E++
Sbjct: 613 LSYLSWFRYANEALLINQWSTVVDGEIACTRANVTCPRSEII 654


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 403 LQYLDFFAHREHQVALNQIHSLLDLVVDGHRAGA*CERVEVV 278
           L YL +F +    + +NQ  +++D  +   RA   C R E++
Sbjct: 613 LSYLSWFRYANEALLINQWSTVVDGEIACTRANVTCPRSEII 654


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 403 LQYLDFFAHREHQVALNQIHSLLDLVVDGHRAGA*CERVEVV 278
           L YL +F +    + +NQ  +++D  +   RA   C R E++
Sbjct: 591 LSYLSWFRYANEALLINQWSTVVDGEIACTRANVTCPRSEII 632


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +2

Query: 293  LASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAH 472
            L++  S + ++ K  +         + ++ +EVE  +  I +  +  TQLE E   LR  
Sbjct: 912  LSANISKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREE 971

Query: 473  ASQDTLAQLPAAQGN 517
              +  LA   A +G+
Sbjct: 972  LEEMKLAIEKAHEGS 986


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,048
Number of Sequences: 2352
Number of extensions: 10491
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)