Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b14f
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68119-5|CAA92196.1| 102|Caenorhabditis elegans Hypothetical pr... 73 1e-13
U49947-3|AAK68211.1| 114|Caenorhabditis elegans Hypothetical pr... 73 1e-13
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 68 5e-12
Z29560-10|CAA82663.1| 296|Caenorhabditis elegans Hypothetical p... 35 0.053
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 27 8.1
U64836-8|AAG24063.1| 339|Caenorhabditis elegans Serpentine rece... 27 8.1
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 27 8.1
AC006648-3|AAF39855.1| 216|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z68119-5|CAA92196.1| 102|Caenorhabditis elegans Hypothetical
protein T18D3.7 protein.
Length = 102
Score = 73.3 bits (172), Expect = 1e-13
Identities = 38/70 (54%), Positives = 47/70 (67%)
Frame = +2
Query: 296 ASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHA 475
A+ + VAIDNKI QAMDLVK+HL FAVREEVE L+ I +L R+ L EN LR +
Sbjct: 27 ATSNTVVAIDNKIVQAMDLVKTHLTFAVREEVETLRTTITDLEARLNALREENRLLRENV 86
Query: 476 SQDTLAQLPA 505
S + LA + A
Sbjct: 87 SPEVLAFITA 96
>U49947-3|AAK68211.1| 114|Caenorhabditis elegans Hypothetical
protein C30G4.7 protein.
Length = 114
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/60 (60%), Positives = 45/60 (75%)
Frame = +2
Query: 320 IDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQL 499
IDNKIEQAMDLVK+HLMFAVREEV+ L+ +I +L + +LE EN+ L+ DTL QL
Sbjct: 51 IDNKIEQAMDLVKTHLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKRTIPNDTLKQL 110
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = +2
Query: 290 PLASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 469
P + + IDNKIEQAM+LVK+HL +AVREEV+ L+ IAEL ++ + + E TY R
Sbjct: 470 PSTTADTHTPIDNKIEQAMELVKTHLTYAVREEVDTLRNTIAELEYQMRESQYECTYYRQ 529
Query: 470 HASQDTLAQLPAAQGNKPAAQPQP 541
+ + D + Q + + A+ +P
Sbjct: 530 NCAPDLIEQASSFVHQQMASHQRP 553
>Z29560-10|CAA82663.1| 296|Caenorhabditis elegans Hypothetical
protein K03H1.11 protein.
Length = 296
Score = 34.7 bits (76), Expect = 0.053
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 188 GTMQTKLMNGSYTSIMNKQDLLREVVVKYIDYFYPLASGTSAVAIDNKIEQAMDLVKSHL 367
G T L+N + ++I D++R V+V I + G ++ ++ K + D + H+
Sbjct: 17 GLKPTDLVNSALSNI----DVMR-VIVDMIPKIRAIKIGITSEKLNGKCDG--DEFELHI 69
Query: 368 MFAVREEV-EVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKPAAQ 532
REE+ E+L + +++ I L++EN + S + LAQL N P Q
Sbjct: 70 PKVNREEIQELLHFLMPQIVNEIHSLQLENELVGDEISDEQLAQLLQLTKNAPLKQ 125
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 266 VKYIDYFY-PLASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAEL 421
V Y+D Y P A D K+E+A+D H ++E+E+ + EL
Sbjct: 423 VSYVDKNYDPKMEAKRAETFDEKVEKAVDSAGVHAAEKRQKEIEIDPSKFLEL 475
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 377 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKP 523
VRE + V ER+A L E ++ EN+ L+A + A N P
Sbjct: 181 VRERLRVAMERVATLEEELSTKGDENSSLKARIATYAAEAEEAMASNAP 229
>U64836-8|AAG24063.1| 339|Caenorhabditis elegans Serpentine
receptor, class h protein187 protein.
Length = 339
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 363 WLLTRSIACSILLSMATALVPDASG 289
WL+T IA ++ S LVPD +G
Sbjct: 142 WLITHYIAIGLIFSSFALLVPDQNG 166
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 377 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKP 523
VRE + V ER+A L E ++ EN+ L+A + A N P
Sbjct: 181 VRERLRVAMERVATLEEELSTKGDENSSLKARIATYAAEAEEAMASNAP 229
>AC006648-3|AAF39855.1| 216|Caenorhabditis elegans Hypothetical
protein F59H6.6 protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 224 CSFHSSVSFASFPLLLRVFTVRDFRVP 144
C+F +S F S PLL + F DF +P
Sbjct: 46 CAFCASACFDSIPLLKQKFPYADFPMP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,042,870
Number of Sequences: 27780
Number of extensions: 228419
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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