Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b13r
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    28   8.8  
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     28   8.8  

>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 160 GNASQRSIKSLPPL*HESRIKQSNKIYSHSIIRYNKY 270
           GN S  SI ++PP+   S    + KI S SII  N Y
Sbjct: 519 GNTSLNSINAIPPIMGYSHSDVNKKIGSASIIGGNVY 555


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 552 DFIYIVIIYTRYFNEVNYLSLILPRKDD 469
           +F++I+ +  + F   N LSL+L RKD+
Sbjct: 415 EFVFILKMMLKLFTITNELSLVLQRKDE 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,998
Number of Sequences: 37544
Number of extensions: 191225
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)