Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b13f
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    29   0.41 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   2.2  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   8.8  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 336 PRGIYPQGHHLRLI*CTVNTTLVFSFSLFLYRFSVSRLVFLC 211
           P  I+ +G+  R++   +NT LV+  S + +RF V   +FLC
Sbjct: 340 PLDIWLKGYWGRVVSILLNTILVYMVSNWKHRFPVFFPIFLC 381


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 369 SDSEDEGGEVECPIQ-QQQQYRYMNSEVGTLHRAKPLEDTVTDGHLWPSNNDKKVATMER 545
           S SE +  E E   + +QQ+ ++ N E+   + AKP+ED  T      SN   ++     
Sbjct: 301 SFSEKQASEAEHKDEPEQQRKQFYNFELCLAYHAKPVED-ATSTSARASNLHLRIVFYPG 359

Query: 546 QPVDIGFLVSFVVDARG 596
               +GF +   V+ +G
Sbjct: 360 IKGTVGFPLPIWVEIKG 376


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 431 LHEQRSRHAAPGETARGHG 487
           LHE+ S  AA G+TA+  G
Sbjct: 222 LHEEESEQAAEGDTAKNSG 240


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 456 LHRAKPLEDTVTDGHLWPSNNDKKVATMER 545
           +HR+       T+GHL+P  N  +++T +R
Sbjct: 459 IHRSHHDFIFTTEGHLFPVTNQTRLSTSQR 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,478
Number of Sequences: 5004
Number of extensions: 34945
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)