Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b13f
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    28   6.8  
10_08_0764 + 20417562-20417729,20417981-20418071,20418175-204182...    27   9.0  
08_02_0601 + 19177129-19177245,19178231-19179103                       27   9.0  
02_05_0931 - 32812944-32813363,32814296-32814364,32814466-328145...    27   9.0  
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    27   9.0  

>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 529  SPRWNDNQSILGFWCP 576
            SP W DNQ ++GF+ P
Sbjct: 1132 SPEWKDNQLMIGFFSP 1147


>10_08_0764 +
           20417562-20417729,20417981-20418071,20418175-20418227,
           20418259-20418417,20418493-20418564,20419186-20419258,
           20419642-20419687,20420173-20420236,20420321-20420374,
           20420430-20420540,20420924-20421016
          Length = 327

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 563 PNIDWLS---FHRGDFFVIIARPQVSVGDRVLERFRPVQRADFAVHVAVXXXXLNRTLDF 393
           P   W +   FH  +F V   R  V V  R ++   P    D AVH++        T D 
Sbjct: 67  PEYGWTTQKVFHFLNFLVNGVRSIVFVLRRNVQLIHP--EIDAAVHLSYGGIKQYSTADT 124

Query: 392 ASFVFRVAHERVLHEL 345
           ++   R A  R+LH++
Sbjct: 125 STCASRYARARILHDV 140


>08_02_0601 + 19177129-19177245,19178231-19179103
          Length = 329

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 413 TATAVPLHEQRSRHAAPGETARGHGH 490
           TATA      R+ HAAPG +  G GH
Sbjct: 261 TATAPTTTVNRTNHAAPGLSHGGSGH 286


>02_05_0931 -
           32812944-32813363,32814296-32814364,32814466-32814572,
           32816676-32816718
          Length = 212

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 404 SYSTATAVPLHEQRSRHAAPGETARGHGHRRTPVAEQ**QKSRHDGTT 547
           SYS+ +   LHE R RHA   + ARG G R     +   Q+  H  +T
Sbjct: 67  SYSSRSVPYLHESRHRHAM--KRARGTGGRFLNTKQLQLQQQSHTTST 112


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +3

Query: 357 DTFMSDSEDEGGEVECPIQQQQQYRYMNSEVGTLHRAKPLEDTVTDGHLWPSNNDKKVAT 536
           D+  S+ ED+   +     + +   +++    + H    +   + DG  W   ND KVA 
Sbjct: 741 DSSTSNMEDDDAHIPDGSGRYKLMAFVSHMGTSTHCGHYVAHVLKDGR-WVIFNDSKVAA 799

Query: 537 MERQPVDIGFLVSF 578
               P D+G+L  F
Sbjct: 800 SVDLPKDMGYLYFF 813


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,161
Number of Sequences: 37544
Number of extensions: 267878
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)