Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b13f
         (619 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM690372-1|CAM84316.1|  353|Anopheles gambiae purine nucleoside ...    27   0.64 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   1.1  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   4.5  

>AM690372-1|CAM84316.1|  353|Anopheles gambiae purine nucleoside
           phosphorylase protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 270 LVSCLQCIKSNEDGGLEGKYRVAAPELMQD 359
           L+ C   I +N  GG   KYRV    L++D
Sbjct: 170 LIGCTHLIATNAAGGANPKYRVGDIMLIKD 199


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 475  SRTRSPTDTCGRAIMTKKSPRWNDNQSI 558
            S ++SP       +M  K+P WN+N  +
Sbjct: 1574 SSSQSPAPVRREFVMHNKAPMWNENSQV 1601


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 588 RQQQRTPKTQYRLVVVPSWRLFCHYCSATGVRR*PCP 478
           ++ +++ +++  L V P  ++ CH C   G  +  CP
Sbjct: 182 KRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDCP 218


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,730
Number of Sequences: 2352
Number of extensions: 10468
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)