Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b13f
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 387 GGEVECPIQQQQQYRYMNS 443
           GGE   P Q  Q Y +M+S
Sbjct: 151 GGEEITPRQSHQSYHHMDS 169


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 488  DRVLERFRPVQRADFAVHVA 429
            D ++E  R VQR + +VH A
Sbjct: 1046 DSLVEAVRAVQRGEMSVHRA 1065


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +3

Query: 393 EVECPIQQQQQYRYMNSEVGTLHRAKPLEDTVTDGHL 503
           E +CP+ Q+ +   ++S   T       + T+   HL
Sbjct: 309 ESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHL 345


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 477 RAVSPGAACRLRCSCSG 427
           + + PG A  L+CS +G
Sbjct: 431 QTLQPGPAVSLKCSAAG 447


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 477 RAVSPGAACRLRCSCSG 427
           + + PG A  L+CS +G
Sbjct: 431 QTLQPGPAVSLKCSAAG 447


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 498 HLWPSNNDKKVATMERQP 551
           H WP  ND   + ME  P
Sbjct: 72  HEWPVGNDTLKSKMEIDP 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,918
Number of Sequences: 438
Number of extensions: 2449
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)