Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b10r
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U88315-8|AAN84845.1|  472|Caenorhabditis elegans Nematode astaci...    28   8.0  
U88315-7|AAL16314.1|  546|Caenorhabditis elegans Nematode astaci...    28   8.0  

>Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical
           protein C34C6.7 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 504 LSYDLIVFFYRLHVWTSSQLTWY*VVTGAHRHLQRKCRHS 623
           +S+DLI F   L  +   ++TW+ +V  A +   R C +S
Sbjct: 336 ISWDLIHFLLLLSPYEEGEVTWWTIVLEAVKCSLRSCHNS 375


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 419 TIKRTYNVLVYGFEFITVFIRV*KSTLLFI*VFIF 315
           T+ RTY +L +GF  I +      S+ LFI VF+F
Sbjct: 71  TVVRTY-ILHFGFYVIVIICFALNSSTLFILVFLF 104


>U88315-8|AAN84845.1|  472|Caenorhabditis elegans Nematode astacin
           protease protein9, isoform c protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 304 GRNKTRLQIVRDKYIRTNYLS*FQNYYDLFYSFEYSFFRVHGRKRS*HAIFAFKNY 137
           G +   L++ RDKYI+ ++ +    +YD F   +   +  +G K +  +I  +  Y
Sbjct: 334 GVSHQHLRLDRDKYIKIDWSNIDPQHYDTFAISDAKLYTSYGTKYAYDSIMHYNAY 389


>U88315-7|AAL16314.1|  546|Caenorhabditis elegans Nematode astacin
           protease protein9, isoform b protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 304 GRNKTRLQIVRDKYIRTNYLS*FQNYYDLFYSFEYSFFRVHGRKRS*HAIFAFKNY 137
           G +   L++ RDKYI+ ++ +    +YD F   +   +  +G K +  +I  +  Y
Sbjct: 408 GVSHQHLRLDRDKYIKIDWSNIDPQHYDTFAISDAKLYTSYGTKYAYDSIMHYNAY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495,967
Number of Sequences: 27780
Number of extensions: 353759
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)