Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b10f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   6.1  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   6.1  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   8.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.1  

>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 462 ICSLSSGVKRVSF-LGNTNNNAPALLRISRNC 370
           + +LS+G K +    GN  +N PAL   S NC
Sbjct: 306 LLALSTGAKTIKLKYGNRGHNIPALDIASGNC 337


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 131 IFRQSRLLHPATFLNLIMFFSSVMKL 54
           IFR+SR L      N+I FFSS ++L
Sbjct: 268 IFRESRTLARLNHPNVIRFFSSWVEL 293


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 293 LEGRSLTSWSTSRHCVVAR 349
           ++G  LT+WST ++C + R
Sbjct: 160 VKGSELTAWSTHQYCEMVR 178


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 YRMQQYDLHTVPHGCRSASFNLEGRSLTSWST 325
           +R+  + +H  P G R A+  L+G ++  WST
Sbjct: 17  HRLSIFSIHIHPDGSRIATGGLDG-TIRIWST 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,718
Number of Sequences: 5004
Number of extensions: 51041
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)