Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b10f
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 53 1e-07
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 32 0.38
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682... 29 2.7
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 29 3.6
04_04_1080 - 30674122-30674204,30674842-30674913,30675261-306753... 29 3.6
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 28 6.2
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 28 6.2
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 27 8.2
03_04_0089 - 17217235-17217461,17218298-17218418 27 8.2
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 53.2 bits (122), Expect = 1e-07
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Frame = +2
Query: 173 IFIIMSPVNPVAASHEFSVYRMQQYDLHTVPHGCRSASFNLEGRSL---TSWSTSRHCVV 343
+ ++++ V A+ VYR+ QYDL P G R+A+ N +L + SR +V
Sbjct: 21 LLLLLACVELGDAAAAVGVYRLIQYDLAGAPLGSRAAALNHHAAALPLPAAADLSRSALV 80
Query: 344 ARVQDIT---LEQFLEIRNKAGALLLVLPKNETLLTPEE-----REHIQLLEMAMVQQEI 499
A + D+ L +L + G LL++LPK E + + LE ++ Q++
Sbjct: 81 APLLDLPLAFLRDYLADKKYLGGLLILLPKKLNHEPNNEDKGQVKASLAELEQLLLHQQV 140
Query: 500 NAPVYFARWTPEMEDILADLQ 562
PVYFA +++LAD++
Sbjct: 141 PYPVYFAFQDDHFDNLLADIR 161
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +2
Query: 389 NKAGALLLVLPKNETLLTPEEREHIQLLEMAMVQQEINAPVYFA 520
N G L +P+ T+ TPEERE IQ LE +E+ V+FA
Sbjct: 348 NILGQLAAAMPQALTV-TPEEREAIQRLEAMGFNRELVLEVFFA 390
>05_04_0186 +
18866762-18866949,18867207-18867345,18868068-18868295,
18869023-18869081,18869411-18869482,18870239-18870287,
18870431-18870661,18872018-18872187,18872274-18872478,
18872826-18873494,18873592-18873819,18873901-18874689
Length = 1008
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +3
Query: 456 SIFNCWKWRWYNKRSMHPFTLLVGLLKWRTFWLTSSI 566
++ CW + + F + GL+ W+ FW+T +
Sbjct: 422 NMLRCWGGGLAERPDFYHFCDIYGLMVWQEFWITGDV 458
>11_06_0364 -
22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 287 FNLEGR-SLTSWSTSRHCVVARVQDITLEQFLEIRNKAGALLLVLPKNETLLTPEEREHI 463
F+L+GR SLTS T RH V+ + F+ I L V K E+ + + +
Sbjct: 709 FSLQGRCSLTSQRTGRHLVIGSTWERDKIVFMSIDFSRLRSLTVFGKWESFFISDNMKLL 768
Query: 464 QLLEMAMVQQEINAPVYF 517
++L++ N + F
Sbjct: 769 RVLDLENASDVTNDDLEF 786
>04_04_1080 -
30674122-30674204,30674842-30674913,30675261-30675324,
30676358-30676394,30676562-30676675,30676791-30677002,
30677180-30677335,30677556-30678443
Length = 541
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 565 MLEVSQNVLHFRSPTSKVNGCIDLLLYHRHFQQLNMLSFFRRQKSF 428
+++ + NVL P ++ ++ Q L M+ +FRR+KSF
Sbjct: 432 VVQKNDNVLMIVPPPEPISTGCQWAKIEKNVQMLGMIKYFRRRKSF 477
>11_06_0361 -
22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 287 FNLEGR-SLTSWSTSRHCVVARVQDITLEQFLEIRNKAGALLLVLPKNETLLTPEEREHI 463
F+L+GR SLTS T RH V+ + F+ I L V K E+ + + +
Sbjct: 703 FSLQGRCSLTSQRTGRHLVIGSTWERDKIVFMSIDFSRLRSLTVFGKWESFFISDNMKLL 762
Query: 464 QLLEM 478
++L++
Sbjct: 763 RVLDL 767
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +2
Query: 290 NLEGRSLTSWSTSRHCVVARVQDITLEQFLEIRNKAGALLLVLPKNETLLTPEEREHIQL 469
N++ +S +WS + VQ+ LEQ +I N +G + N+ LLT E+ E L
Sbjct: 337 NVDNQSQHAWSLDIFNLQESVQEPILEQSSDIGNISGNGVDDDVMNDELLTEEDIEQF-L 395
Query: 470 LEMAMVQQEINAPVYFARWTPEME 541
E + N + ++ PE++
Sbjct: 396 EEEQQEALKGNNAIIDRKYIPELD 419
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +2
Query: 290 NLEGRSLTSWSTSRHCVVARVQDITLEQFLEIRNKAGALLLVLPKNETLLTPEEREHIQL 469
N++ +S +WS + VQ+ LEQ +I N G + N+ LLT E+ E
Sbjct: 171 NVDNQSQHAWSLDIFNLQESVQEPILEQSSDIGNINGNGVDDAVMNDELLTEEDIEQFLE 230
Query: 470 LEMAMVQQEINAPVYFARWTPEME 541
E + NA + ++ PE++
Sbjct: 231 EEQQEALKGNNANI-DRKYIPELD 253
>03_04_0089 - 17217235-17217461,17218298-17218418
Length = 115
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 417 NTNNNAPALLRISRNCSKVMSCTRATTQ*RDVLH 316
+TN + LL +S +C + C R+ RD+LH
Sbjct: 42 STNRHTLCLLSLSISCLPTIFCRRSAAVRRDLLH 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,713
Number of Sequences: 37544
Number of extensions: 332667
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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