Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b10f
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-13|CAN86915.1| 563|Caenorhabditis elegans Hypothetical p... 45 5e-05
Z81586-12|CAB04692.1| 557|Caenorhabditis elegans Hypothetical p... 45 5e-05
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 30 1.4
U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical pr... 29 1.8
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 29 2.4
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80453-7|AAN63451.1| 286|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80453-6|AAK31447.1| 349|Caenorhabditis elegans Hypothetical pr... 27 9.7
U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical pr... 27 9.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.7
>Z81586-13|CAN86915.1| 563|Caenorhabditis elegans Hypothetical
protein T05F1.1b protein.
Length = 563
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Frame = +2
Query: 143 LPFYLFVALPIFII--MSPVNPVAASHEFSVYRMQQYDLHTVPHGCRSASFNLEGRSLTS 316
L FY+ + L I ++ V V + EF YR+ QY++ +GC++ + E SL +
Sbjct: 14 LLFYMTLMLTICVVNGSQQVGEVVET-EFHAYRLHQYEISGNIYGCKNYRVSYEAVSLGA 72
Query: 317 WSTSRHCVVARVQDITLEQFLEI-RNKAGALLLVLPKNETLLTPEEREHIQLLEMAMVQQ 493
T R +V +D+ ++ GA+L+ +P N L +R+ LE ++
Sbjct: 73 -RTLRRTMVTTWRDLLTTDVDDMWALSTGAVLIFIPDNLDELNDIDRKAFIDLEAKLLSA 131
Query: 494 EINAPVYFARWTPEMEDILADL 559
+ + VY A + + IL D+
Sbjct: 132 KTDLAVYVAPFNDDAVSILHDV 153
>Z81586-12|CAB04692.1| 557|Caenorhabditis elegans Hypothetical
protein T05F1.1a protein.
Length = 557
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Frame = +2
Query: 143 LPFYLFVALPIFII--MSPVNPVAASHEFSVYRMQQYDLHTVPHGCRSASFNLEGRSLTS 316
L FY+ + L I ++ V V + EF YR+ QY++ +GC++ + E SL +
Sbjct: 14 LLFYMTLMLTICVVNGSQQVGEVVET-EFHAYRLHQYEISGNIYGCKNYRVSYEAVSLGA 72
Query: 317 WSTSRHCVVARVQDITLEQFLEI-RNKAGALLLVLPKNETLLTPEEREHIQLLEMAMVQQ 493
T R +V +D+ ++ GA+L+ +P N L +R+ LE ++
Sbjct: 73 -RTLRRTMVTTWRDLLTTDVDDMWALSTGAVLIFIPDNLDELNDIDRKAFIDLEAKLLSA 131
Query: 494 EINAPVYFARWTPEMEDILADL 559
+ + VY A + + IL D+
Sbjct: 132 KTDLAVYVAPFNDDAVSILHDV 153
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 428 ETLLTPEEREHIQLLEMAMVQQEINAPVYF 517
E LT EE+EHI +E AM +++NAP F
Sbjct: 599 EIELTEEEKEHIARIE-AMASEDLNAPSPF 627
>U88184-8|AAK31515.1| 301|Caenorhabditis elegans Hypothetical
protein F36H5.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 149 FYLFVALPIFIIMSPVNPVAASH---EFSVYRMQQYDLHTVPHGCRSASFNLEGRSLTSW 319
FYLF+ L F++ + SH + SV M + +H G RS + S W
Sbjct: 29 FYLFIVLEAFLLSGAIQVSYLSHKTPQASVGEMVEKVVHCTSIG-RSPEPVEQSSSNYCW 87
Query: 320 STSRHCVVARVQDITL 367
+T C+V VQ I L
Sbjct: 88 TTLVICLVYLVQAILL 103
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 197 NPVAASHEFSVYRMQQY---DLHTVPHGCRSASFNLEGRSLTSWSTS 328
N A EFS+Y Q Y + +VPHG S +FN S++S S S
Sbjct: 183 NNYAVKEEFSMYLPQNYCPQNQMSVPHGDVSHNFNSPTSSVSSSSYS 229
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 468 CWKWRWYNKRSMHPFTLLVGLL 533
CWKW+ N RS+H L + ++
Sbjct: 1076 CWKWQTLNARSLHAVALQLKII 1097
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 468 CWKWRWYNKRSMHPFTLLVGLL 533
CWKW+ N RS+H L + ++
Sbjct: 1076 CWKWQTLNARSLHAVALQLKII 1097
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 28.7 bits (61), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 468 CWKWRWYNKRSMHPFTLLVGLL 533
CWKW+ N RS+H L + ++
Sbjct: 1076 CWKWQTLNARSLHAVALQLKII 1097
>Z78539-1|CAB01727.1| 350|Caenorhabditis elegans Hypothetical
protein C31E10.1 protein.
Length = 350
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 140 YLPFYLFVALPIFIIMSPVNPVAASHEFSVY 232
Y+P + ALP+F I P A S S+Y
Sbjct: 277 YIPLFFVFALPLFNINFPYASTAISATISIY 307
>Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical
protein H03A11.1 protein.
Length = 512
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 125 RQSRLLHPATFLNLIMFFSSVMKLTQKLISS 33
RQ +L P+TF L+ F+S+ LT+ L S
Sbjct: 407 RQCCILRPSTFQTLMNFYSTPKSLTKALHES 437
>U80453-7|AAN63451.1| 286|Caenorhabditis elegans Hypothetical
protein C23H3.2b protein.
Length = 286
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 105 MKQTALPKYSKAICLFIFSLPYLF 176
MK + LP YS + +FI P+LF
Sbjct: 211 MKNSLLPTYSTLLLIFIDLFPFLF 234
>U80453-6|AAK31447.1| 349|Caenorhabditis elegans Hypothetical
protein C23H3.2a protein.
Length = 349
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 105 MKQTALPKYSKAICLFIFSLPYLF 176
MK + LP YS + +FI P+LF
Sbjct: 274 MKNSLLPTYSTLLLIFIDLFPFLF 297
>U61947-5|AAB03134.1| 723|Caenorhabditis elegans Hypothetical
protein C06G3.4 protein.
Length = 723
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 98 WLDEADGFAEIFKGYLPFYLFVALPIFIIMSPVNPVAASHEFSVYRMQQY 247
W+D+ A +G PF+ F P+FI N + ++ ++ + Y
Sbjct: 643 WMDQMPNKANFNEGSHPFHHFHLRPLFIFHDTKNNMDSNKNDKMFTLMTY 692
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -1
Query: 510 TGALISCCTIAISSN*I---CSLSSGVKRVSFLGNTNNNAPALLRISRNCSKVMSCT--R 346
TG I C ++ SS+ + C++ VS TN+N+ L + R C++ + T +
Sbjct: 4392 TGTRIITCEVSNSSSKVNASCNVERVHNTVSDFVMTNDNSTRFLAVGRKCTRERNNTILK 4451
Query: 345 ATTQ*RDVLHDVKE 304
A R+ + D+ E
Sbjct: 4452 AVVVARENIGDICE 4465
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -1
Query: 510 TGALISCCTIAISSN*I---CSLSSGVKRVSFLGNTNNNAPALLRISRNCSKVMSCT--R 346
TG I C ++ SS+ + C++ VS TN+N+ L + R C++ + T +
Sbjct: 4392 TGTRIITCEVSNSSSKVNASCNVERVHNTVSDFVMTNDNSTRFLAVGRKCTRERNNTILK 4451
Query: 345 ATTQ*RDVLHDVKE 304
A R+ + D+ E
Sbjct: 4452 AVVVARENIGDICE 4465
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = -1
Query: 510 TGALISCCTIAISSN*I---CSLSSGVKRVSFLGNTNNNAPALLRISRNCSKVMSCT--R 346
TG I C ++ SS+ + C++ VS TN+N+ L + R C++ + T +
Sbjct: 4392 TGTRIITCEVSNSSSKVNASCNVERVHNTVSDFVMTNDNSTRFLAVGRKCTRERNNTILK 4451
Query: 345 ATTQ*RDVLHDVKE 304
A R+ + D+ E
Sbjct: 4452 AVVVARENIGDICE 4465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,310
Number of Sequences: 27780
Number of extensions: 292331
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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