Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b10f
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 466  IAGNGDGTTRDQCTRLLCSLDS 531
            + GNGD + R + +   C +DS
Sbjct: 1872 VPGNGDRSDRPELSEAECDIDS 1893


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 466  IAGNGDGTTRDQCTRLLCSLDS 531
            + GNGD + R + +   C +DS
Sbjct: 1868 VPGNGDRSDRPELSEAECDIDS 1889


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 507 PFTLLVGLLKWRTFWL 554
           P TL+V +L W +FWL
Sbjct: 209 PSTLVV-MLSWFSFWL 223


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 507 PFTLLVGLLKWRTFWLTSSIVLLRM 581
           P  +LV ++ W +FWL  S V  R+
Sbjct: 251 PCCMLV-IVSWVSFWLDQSAVPARV 274


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 507 PFTLLVGLLKWRTFWLTSSIVLLRM 581
           P  +LV ++ W +FWL  S V  R+
Sbjct: 251 PCCMLV-IVSWVSFWLDQSAVPARV 274


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +3

Query: 513 TLLVGLLKWRTFWLTSSIVLLRM 581
           ++L+ +L W +FW+       R+
Sbjct: 252 SILIVMLSWVSFWINHEATSARV 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,027
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)