Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b09r
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   154   9e-39
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    29   0.75 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   5.3  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.0  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   9.3  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   9.3  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  154 bits (374), Expect = 9e-39
 Identities = 67/90 (74%), Positives = 77/90 (85%)
 Frame = -2

Query: 638 RCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPK 459
           RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+++TLF YLENPK
Sbjct: 18  RCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLENPK 77

Query: 458 KYIPGTKMVFAGLKKANERADLIAYLKSAT 369
           KYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 78  KYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 433 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 299
           +L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 508 PLALLASEYENPAAWPVFRPKNP 576
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 385 ISNLLPSNFKVIENSIRSIFHNISGIYFL 299
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 62  FCEKTITKLTRSINNLTFNHSQHCQESINHTIHYVPGTY 178
           F + T+  L      L   HS HC+ +    + ++PGT+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTH 695


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 572 FFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLEN 465
           FFG +TG A  F+Y  + +AK   +N   +   LEN
Sbjct: 56  FFGSQTGTAEDFAYRFSTEAKA-NFNLTNMVFDLEN 90


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 211 TQSFAVVVCEYICTWYIMYCVIYTLLTML 125
           T+ F V++  Y  +W+  YC I  L + L
Sbjct: 36  TRVFLVLISLYFMSWHPNYCTIVYLYSSL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,590
Number of Sequences: 5004
Number of extensions: 55701
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)