Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b09f
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 5e-23
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 30 1.2
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 30 1.2
SB_10369| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3) 30 1.2
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65) 30 1.2
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_38773| Best HMM Match : Flagellin_IN (HMM E-Value=9.9) 30 1.6
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 30 1.6
SB_10025| Best HMM Match : GLYCAM-1 (HMM E-Value=1.3) 30 1.6
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 30 1.6
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 29 2.1
SB_45530| Best HMM Match : DnaB_C (HMM E-Value=0.89) 29 2.1
SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_45711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27) 29 2.8
SB_16260| Best HMM Match : Ribosomal_L12 (HMM E-Value=1.4) 29 2.8
SB_2785| Best HMM Match : ATP-synt_F (HMM E-Value=0.15) 29 3.8
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 29 3.8
SB_11154| Best HMM Match : Flagellin_IN (HMM E-Value=2.2) 29 3.8
SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1) 28 5.0
SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_50121| Best HMM Match : DoxX (HMM E-Value=1.6) 28 5.0
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1) 28 5.0
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8) 28 5.0
SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58) 28 5.0
SB_59013| Best HMM Match : DoxX (HMM E-Value=1.6) 28 5.0
SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64) 28 5.0
SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35) 28 5.0
SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7) 28 6.6
SB_35830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 28 6.6
SB_21888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34048| Best HMM Match : IncA (HMM E-Value=0.75) 28 6.6
SB_30288| Best HMM Match : P19Arf_N (HMM E-Value=6.8) 28 6.6
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8) 28 6.6
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 28 6.6
SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_58630| Best HMM Match : IncA (HMM E-Value=0.5) 27 8.7
SB_44116| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_27023| Best HMM Match : IncA (HMM E-Value=0.55) 27 8.7
SB_14193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_13304| Best HMM Match : IncA (HMM E-Value=0.3) 27 8.7
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 27 8.7
SB_13012| Best HMM Match : TrbC (HMM E-Value=1.4) 27 8.7
SB_58746| Best HMM Match : RA (HMM E-Value=0.85) 27 8.7
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 27 8.7
SB_52805| Best HMM Match : Herpes_BFRF1 (HMM E-Value=2.6) 27 8.7
SB_34352| Best HMM Match : Flagellin_IN (HMM E-Value=5.6) 27 8.7
SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 104 bits (250), Expect = 5e-23
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = +3
Query: 195 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPGTKMV 371
GGKHK GPNLHG FGRKTGQA GFSY+ AN+ KGITW +DTL YLENPKKYIPG V
Sbjct: 49 GGKHKTGPNLHGLFGRKTGQAEGFSYTTANQNKGITWGEDTLMVYLENPKKYIPGRSNV 107
>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_10369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3)
Length = 268
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
Length = 498
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 394 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 444
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_38773| Best HMM Match : Flagellin_IN (HMM E-Value=9.9)
Length = 135
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 275 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 325
>SB_10025| Best HMM Match : GLYCAM-1 (HMM E-Value=1.3)
Length = 517
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 322 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 372
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFH 480
R SL WY L+ Q++ + LP LP+ E+++ +I H
Sbjct: 30 RQCSLFNSWYNLEREHQITTIASLPPIVTLPAGHHTAESTVETINH 75
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 29.5 bits (63), Expect = 2.1
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Frame = +1
Query: 181 TLLKLVAN-TK*DRIYMDSLAEKLARLQDSHTP----MPIKLRAL--HGMTTLSLNILRI 339
T+LK + N T D Y+DS+++K A L H P + + R L G TTL + ++
Sbjct: 329 TMLKKLTNLTNLDMGYLDSVSDKTATLITKHLPNLQSLALSSRQLTDRGTTTLCCKLKKL 388
Query: 340 PRNTSLEPRWYLLDSRRQMSVLT-LLPISNLLPSNFKVIEN-SIRSIFHNISGI 495
T+L+ R + + + ++ L + +L+ S+ + N I+ I +N+ +
Sbjct: 389 ---TTLDLRSCNITNNGMLGIVQGLCHLKSLILSSHPELTNVGIKHITNNLKSL 439
>SB_45530| Best HMM Match : DnaB_C (HMM E-Value=0.89)
Length = 396
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R+ SL WY L+ Q++ ++ LP LPS E+ + +I
Sbjct: 30 RDCSLFNSWYNLEREHQITTISALPPIATLPSGHHTAESIVETI 73
>SB_59750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 297 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGNHTAESIVETINHAKSQI 347
>SB_45711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 380 SSKYHLGSRDVFLGILKIFKESVVIPCNALSFI 282
+S Y L + +F G L+ K SVV+P LSFI
Sbjct: 91 ASFYSLATLGMFAGFLRTKKPSVVVPFLPLSFI 123
>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
Length = 560
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 343 RNTSLEP-RWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R +L P RWY L+ +Q++ LP LP+ E+ + +I H S I
Sbjct: 296 RRGALPPGRWYNLEREQQITTTDSLPTIATLPAGHHTAESIMETINHAKSQI 347
>SB_16260| Best HMM Match : Ribosomal_L12 (HMM E-Value=1.4)
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R+ SL WY L+ Q++ +++LP LP+ E+ + +I
Sbjct: 30 RHCSLFNSWYNLEREHQITTISVLPPIATLPAGHHTAESIVETI 73
>SB_2785| Best HMM Match : ATP-synt_F (HMM E-Value=0.15)
Length = 379
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ + LP LP+ E + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTIAPLPPIATLPAGHNTAEAIVETINHAKSQI 80
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 265 SHTPMPIKLRALHGMTTLSLNILRIPRNTSLEPRWYLLD 381
SH P P K+RA SL++LR N SL W L D
Sbjct: 1674 SHQPTPSKIRAGCPCAPGSLHVLRPVNNDSLLVGWTLPD 1712
>SB_11154| Best HMM Match : Flagellin_IN (HMM E-Value=2.2)
Length = 311
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEQEQQITTAASLPPIVTLPAGHHTAESIVETINHAKSQI 80
>SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)
Length = 409
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTTDSLPTIATLPAGHHTAESIMETINHAKSQI 80
>SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ LP LP+ E+ + +I H S I
Sbjct: 373 RQCSLFNSWYNLEREQQITTTDSLPTIATLPAGHHTAESIMETINHAKSQI 423
>SB_50121| Best HMM Match : DoxX (HMM E-Value=1.6)
Length = 338
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY ++ +Q++ LP LP+ + E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNVEREQQITTTDSLPTIATLPAGHRTTESIMETINHAKSQI 80
>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
Length = 908
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ + E+ + +I
Sbjct: 794 RQCSLFNSWYNLEREHQITTISALPPIATLPAGHHMAESIVETI 837
>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
Length = 672
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEQEHQITTISALPPIATLPAGHHTAESIVETI 73
>SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)
Length = 534
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R+ SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 323 RHCSLFNSWYNLEREHQITTISALPPIATLPAGHHTAESIVETI 366
>SB_59013| Best HMM Match : DoxX (HMM E-Value=1.6)
Length = 338
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY ++ +Q++ LP LP+ + E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNVEREQQITTTDSLPTIATLPAGHRTTESIMETINHAKSQI 80
>SB_34369| Best HMM Match : Herpes_US9 (HMM E-Value=0.64)
Length = 361
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ + E+ + +I
Sbjct: 80 RQCSLFNSWYNLEREHQITTIAALPPIATLPAGHQTAESIVETI 123
>SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)
Length = 572
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++++ LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITIIASLPPIATLPAGHHTAESIVETI 73
>SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7)
Length = 338
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTIAFLPPIATLPAGHHTAESIVETI 73
>SB_35830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 382 RQCSLFNSWYNLEREHQITTISALPPIATLPAGHHTAESIVETI 425
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 244 FRPKNPCRFGPTLCLPPASTVWHWAHRCTKIFFPFSAFPAGTPILNFYN 98
F P P L + TVW W + F + TP+L FY+
Sbjct: 162 FLPNLSTVMAPMNDLLKSDTVWQWTEVQQEAFDKVKGMVSTTPVLTFYD 210
>SB_21888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTISALPPIATLPAGHHTAESIVETI 73
>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTIASLPTIATLPAGHHTAESIVETI 73
>SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 217 RIYMDSLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSLEP 363
RIY + RL TP+ +L + T L LR P T L P
Sbjct: 146 RIYKKNDPNSATRLTPMRTPLTTRLTPMRTPLTTCLTPLRTPLTTRLTP 194
>SB_34048| Best HMM Match : IncA (HMM E-Value=0.75)
Length = 403
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYYLEREHQITTIASLPPIATLPAGHHTAESIVETI 73
>SB_30288| Best HMM Match : P19Arf_N (HMM E-Value=6.8)
Length = 256
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 155 RQCSLFNSWYNLEREHQITTISALPSIVTLPAGHHTAESIVETI 198
>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 507
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 244 FRPKNPCRFGPTLCLPPASTVWHWAHRCTKIFFPFSAFPAGTPILNFYN 98
F P P L + TVW W + F + TP+L FY+
Sbjct: 162 FLPNLSTVMAPMNDLLKSDTVWQWTEVQQEAFDKVKGMVSTTPVLTFYD 210
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ ++ LP LP+ E+ + +I
Sbjct: 798 RQCSLFNSWYNLEREHQITTISALPSIVTLPAGHHTAESIVETI 841
>SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Frame = -2
Query: 391 AFLSPANTILVPGMYFLGFSRYSKRVSSFHVMPLALLASEYENPAAW----PVFRPKNPC 224
AFLS + G+ G S ++V + + SE F P
Sbjct: 60 AFLSRVHPTCFTGLRKQGISPNPEKVRAIQALAAPENVSELRQVTGMINYLGKFLPNLST 119
Query: 223 RFGPTLCLPPASTVWHWAHRCTKIFFPFSAFPAGTPILNFYN 98
P L + TVW W + F + TP+L FY+
Sbjct: 120 VMAPMNDLLKSDTVWQWTEVQQEAFDKVEEMISTTPVLTFYD 161
>SB_58630| Best HMM Match : IncA (HMM E-Value=0.5)
Length = 307
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 367 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 5 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 47
>SB_44116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTIAALPPIATLPAGHHTAESIVETI 73
>SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)
Length = 933
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 618 RQCSLFNSWYNLEREHQITTIAALPPIATLPAGHHTAESIVETI 661
>SB_14193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 310 TTLSLNILRIPRN-TSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
TT++ + + ++ +S+ WY L+ Q++ + LP +LP+ E+ + +I
Sbjct: 96 TTIAAIVTSLGKSLSSVAEGWYNLEREHQITTIASLPPIAILPAGHHTAESIVETI 151
>SB_13304| Best HMM Match : IncA (HMM E-Value=0.3)
Length = 611
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 231 RQCSLFNSWYNLEREHQITTIAALPPIATLPAGHHTAESIVETI 274
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 364 RWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
RWY L+ Q++ + LP LP+ E+ + +I
Sbjct: 3 RWYNLEREHQITTIAFLPPIATLPAGHHTAESIVETI 39
>SB_13012| Best HMM Match : TrbC (HMM E-Value=1.4)
Length = 367
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTIAALPPIATLPAGHHTAESIVETI 73
>SB_58746| Best HMM Match : RA (HMM E-Value=0.85)
Length = 820
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + I
Sbjct: 564 RQCSLFNSWYNLEREHQITTIAALPTIATLPAGHHTAESIVEMI 607
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ +Q++ + LP LP+ E+ + +I
Sbjct: 232 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETI 275
>SB_52805| Best HMM Match : Herpes_BFRF1 (HMM E-Value=2.6)
Length = 309
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREHQITTIVALPPIATLPAGHHTAESIVETI 73
>SB_34352| Best HMM Match : Flagellin_IN (HMM E-Value=5.6)
Length = 127
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
R SL WY L+ +Q++ LP LP+ E+ + +I H S I
Sbjct: 30 RQCSLFNSWYNLEREQQITTTDSLPPIATLPAGHHTAESIMETINHAKSQI 80
>SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 343 RNTSLEPRWYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSI 474
R SL WY L+ +Q++ + LP LP+ E+ + +I
Sbjct: 30 RQCSLFNSWYNLEREQQITTIASLPPIATLPAGHHTAESIVETI 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,081
Number of Sequences: 59808
Number of extensions: 389928
Number of successful extensions: 1089
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -