Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b09f
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical ...   146   1e-35
Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical pr...   141   3e-34
Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    29   3.3  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulat...    28   5.7  
AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z66519-13|CAI46547.1|  281|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z66519-12|CAA91376.2|  288|Caenorhabditis elegans Hypothetical p...    27   7.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical
           protein E04A4.7 protein.
          Length = 111

 Score =  146 bits (354), Expect = 1e-35
 Identities = 65/102 (63%), Positives = 78/102 (76%)
 Frame = +3

Query: 120 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGI 299
           +PAG+ E GKK++ QRC QCH V++    K GP LHG  GR +G  +GF YS ANK KG+
Sbjct: 4   IPAGDYEKGKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGV 62

Query: 300 TWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK 425
            W  +TLFEYL NPKKYIPGTKMVFAGLKKA+ERADLI Y++
Sbjct: 63  VWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIE 104


>Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical
           protein ZC116.2 protein.
          Length = 123

 Score =  141 bits (342), Expect = 3e-34
 Identities = 64/102 (62%), Positives = 79/102 (77%)
 Frame = +3

Query: 120 VPAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGI 299
           +P G+ E GKKIF QRC QCH V +  + K GP L+G  GR++GQ AGF YS ANK KG+
Sbjct: 14  IPEGDNEKGKKIFKQRCEQCHVVNSL-QTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGV 72

Query: 300 TWNDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLK 425
            W+  TLF+YL +PKKYIPGTKMVFAGLKKA+ERADLI +++
Sbjct: 73  VWDRQTLFDYLADPKKYIPGTKMVFAGLKKADERADLIKFIE 114


>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
 Frame = -2

Query: 367 ILVPGMYFLGFSR--YSKRVSSFHVMPLALLASEYENPAAWPVFRPKNPCRFGPTLCLPP 194
           IL+ G Y + ++   Y   +    + P    A E+E+    PV   K    F P +   P
Sbjct: 53  ILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLP 112

Query: 193 ASTVWHWAHRCTKI-----FFPFSAFPAGTPILNFY 101
               WH   + T I     FF F   P   PIL  Y
Sbjct: 113 EFKFWHSFMKATLIAITCTFFEFFDVPVFWPILVMY 148


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +3

Query: 234 FGRKTGQAAGFSYSDANK---AKGITWNDDTLFEYLEN--PKKYIPGTK 365
           FG++ G A GF  +  NK    K    ND  L  +L N   KKY   TK
Sbjct: 569 FGKRNGNAYGFEMASINKLADVKNALRNDRNLLHFLVNFIEKKYPDLTK 617


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 400 VLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 504
           +L  LP  N      + ++N ++SI HNI   YFL
Sbjct: 10  LLLFLPQENRYFVELRSLKNLLKSILHNIENDYFL 44


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 491 PEMLWKMLLM-EFSITLKLLGSRFEIGNKVSTLICLLESSKYHLGSRDVFLGILKIFKE 318
           PEM WK     +  I+  + GS FE+  K   L     SS   L S+  ++ ++ IFK+
Sbjct: 805 PEMAWKNFASPQDEISFLVEGSTFEMPEKYIQLYRGNSSSLIVLDSKMHYIRVINIFKK 863


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 491 PEMLWKMLLM-EFSITLKLLGSRFEIGNKVSTLICLLESSKYHLGSRDVFLGILKIFKE 318
           PEM WK     +  I+  + GS FE+  K   L     SS   L S+  ++ ++ IFK+
Sbjct: 805 PEMAWKNFASPQDEISFLVEGSTFEMPEKYIQLYRGNSSSLIVLDSKMHYIRVINIFKK 863


>U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulated
           gene protein.
          Length = 67

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 139 KMERKFLYNDVPSATLLKLVANTK*DRIYMDS 234
           + E+  + NDVPS  LL++V     DRI ++S
Sbjct: 19  RKEQMMVQNDVPSPPLLEVVRPRSRDRIMLES 50


>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 391 AFLSPANTILVPG--MYFLGFSRYSKRVSSFHVMPLALLASEYENPAAWPVFRPKNP 227
           A + P N + +P     + GF      + SF  +P    +   ENP   P+++  NP
Sbjct: 218 AVVDPLNVMSMPRNVAIYSGFDVLCHALESFTALPFDQRSPRPENPGVRPLYQGSNP 274


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 199 PPASTVWHWAH 167
           PP +++WHWAH
Sbjct: 310 PPMASLWHWAH 320


>Z66519-13|CAI46547.1|  281|Caenorhabditis elegans Hypothetical
           protein B0334.2b protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 403 LTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
           +T+  I++L+   F    + +RSI H+I+GI
Sbjct: 230 ITVSEITSLVAKEFHASPHQVRSILHDINGI 260


>Z66519-12|CAA91376.2|  288|Caenorhabditis elegans Hypothetical
           protein B0334.2a protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 403 LTLLPISNLLPSNFKVIENSIRSIFHNISGI 495
           +T+  I++L+   F    + +RSI H+I+GI
Sbjct: 237 ITVSEITSLVAKEFHASPHQVRSILHDINGI 267


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 252  QAAGFSYSDANKAKGITWNDD 314
            +  GFSY D N     TW+DD
Sbjct: 1763 RGVGFSYQDKNVNNDTTWDDD 1783


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 485 MLWKMLLMEFSITLKLLGSRFEIG 414
           ++WK+ +++FSITLK++     +G
Sbjct: 318 VIWKLGVVDFSITLKIVAQEHYLG 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,471
Number of Sequences: 27780
Number of extensions: 312436
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)