Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b09f
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   3.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   3.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   3.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +1

Query: 115  WVYLQETLKMERKFLYNDVPSATLLKLVANT 207
            W  +  ++KM+R+F+  ++  +++ +L   T
Sbjct: 1544 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1574


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +1

Query: 115  WVYLQETLKMERKFLYNDVPSATLLKLVANT 207
            W  +  ++KM+R+F+  ++  +++ +L   T
Sbjct: 1540 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1570


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 PAAWPVFRPKNPCRFGPTL 206
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 PAAWPVFRPKNPCRFGPTL 206
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 PAAWPVFRPKNPCRFGPTL 206
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 PAAWPVFRPKNPCRFGPTL 206
           P ++P F P N  RF P+L
Sbjct: 381 PTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 262 PAAWPVFRPKNPCRFGPTL 206
           P ++P F P N  RF P+L
Sbjct: 370 PTSFPRFIPPNAYRFRPSL 388


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 201 KHKVGPNLHGFFGRKTGQAAGFSYSDANKA 290
           KH +  +L   FG K  +    SYS  NK+
Sbjct: 1   KHHLEYHLRNHFGSKPFKCEKCSYSCVNKS 30



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 540 QCYNCTIILKYLFSSK 587
           +C NCT   KY  S K
Sbjct: 46  RCANCTYATKYCHSLK 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,623
Number of Sequences: 438
Number of extensions: 3990
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)