Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b08r
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    28   8.1  

>U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical
           protein F21F8.2 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 354 TNVDY*SSKYSVRYKILLVASALYDTLTKTAFDSCK*RQFALNITENNQL 205
           T   + ++ + V  +I++   A YD  TK+ + SC   +  LNI   N +
Sbjct: 22  TGTSFIAAPFYVLNEIIVTLGATYDNTTKSYYVSCNSEKPNLNIVIGNNI 71


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 466  NQNKHTANVLKIMYYAMNMNTTICLCGNLYVECL*GSNQCGLLEQQV---LSKVQNLI 302
            N +K  A  + + YYA ++NT I  C + Y      S  CG   Q V    ++ QNL+
Sbjct: 862  NVDKMNAYQMAVDYYAKSVNTAIDPCDDFY------SYACGNFNQSVSFYTARAQNLV 913


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 319 Y*VLAALVVHIGYCLINILHTD-FHTSK*WCSYSLHST*FLIHSLYAYF 462
           Y  LA L V +   ++  + TD FH     CS S  S   L HSLY Y+
Sbjct: 566 YLSLALLQVLVRVLIVERIVTDPFHNFVDLCSLSNISVLSLTHSLYGYY 614


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 440 YIRCMLILIVWEMYCNCNVSS*VSKFSTIFIKSWRFFYLKNQ*QQILEKSFALLNIISYS 619
           Y   +L   +  + CNC +    SKF T F+   R   ++ + ++I + S   L I+S++
Sbjct: 187 YCWILLYAELGNLLCNCIILLVHSKFKTKFLHQQRSLSVRYELEEISQTSKFTL-IVSFT 245

Query: 620 H 622
           H
Sbjct: 246 H 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,597
Number of Sequences: 27780
Number of extensions: 293406
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)