Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b08f
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   3e-27
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)                  29   4.6  
SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)            28   8.1  
SB_24391| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score =  119 bits (286), Expect = 3e-27
 Identities = 51/77 (66%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
 Frame = +2

Query: 449 QLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRG 628
           Q + AWNP DRS+N+FVK++D  TFHRHPVAQSTD IR + G+ RG H WE+ W  RQRG
Sbjct: 57  QAEFAWNPADRSVNVFVKDDDPFTFHRHPVAQSTDSIRAKVGFNRGFHVWEIHWSTRQRG 116

Query: 629 THAVVGVATSHAP--CT 673
           THAVVGVAT+ AP  CT
Sbjct: 117 THAVVGVATAKAPLHCT 133


>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 464 WNPNDRSLNIFVKEEDALT-FHRHPVAQSTD--CIRGRTGYTRGLHCWEVVWPARQRGTH 634
           W+   RS N+++   + +  FH  PV +ST    + G   +  G H WE+      RGT 
Sbjct: 78  WDFQSRSPNVYLCYHNKVACFHIDPVVESTGTAAVLGNKAFAHGQHYWEIKL-TDVRGTS 136

Query: 635 AVVGVATSHA 664
            ++GVAT  A
Sbjct: 137 MMIGVATQDA 146


>SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 666 GAWDVATPTTACVPRCRAGH 607
           G  DV   TT C+P+C  GH
Sbjct: 200 GKCDVEKDTTVCLPKCNEGH 219


>SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 666 GAWDVATPTTACVPRCRAGH 607
           G  DV   TT C+P+C  GH
Sbjct: 100 GKCDVEKDTTVCLPKCNEGH 119


>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
          Length = 1104

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 336 RDTDLTPPESFWPMFMPRQRVRAR 265
           R+TD+TP E   P F  R+R R R
Sbjct: 263 RETDITPREDRTPQFGGRKRARTR 286


>SB_24391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 509 DALTFHRHPVAQSTDCIRGRTGYTRG 586
           ++L  HRHP+  S D I  R  YT G
Sbjct: 24  ESLLGHRHPIISSGDRIALRMSYTNG 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,486
Number of Sequences: 59808
Number of extensions: 256413
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)