Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b08f
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119609-1|AAM50263.1|  349|Drosophila melanogaster LD34464p pro...   167   9e-42
AE013599-53|AAM68374.1|  343|Drosophila melanogaster CG2944-PC, ...   167   9e-42
AE013599-52|AAM68373.1|  363|Drosophila melanogaster CG2944-PD, ...   167   9e-42
AE013599-51|AAM68372.1|  351|Drosophila melanogaster CG2944-PE, ...   167   9e-42
AE013599-50|AAF57346.1|  349|Drosophila melanogaster CG2944-PA, ...   167   9e-42
AE013599-49|AAG22337.2|  343|Drosophila melanogaster CG2944-PB, ...   167   9e-42
AE013599-54|AAF57347.2|  281|Drosophila melanogaster CG2944-PF, ...   157   2e-38
AY118594-1|AAM49963.1|  255|Drosophila melanogaster LD47425p pro...    81   1e-15
AE013599-1668|AAM68601.1|  255|Drosophila melanogaster CG4643-PB...    81   1e-15
AE013599-1667|AAF58404.1|  255|Drosophila melanogaster CG4643-PA...    81   1e-15
AY069214-1|AAL39359.1|  293|Drosophila melanogaster GH26238p pro...    39   0.007
AF231038-1|AAF34807.1|  293|Drosophila melanogaster SP555 protei...    39   0.007
AE014134-850|AAF52206.1|  293|Drosophila melanogaster CG14041-PB...    39   0.007
AE014134-849|AAF52205.2|  301|Drosophila melanogaster CG14041-PA...    39   0.007

>AY119609-1|AAM50263.1|  349|Drosophila melanogaster LD34464p
           protein.
          Length = 349

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 57  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 116

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 117 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 176

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 177 PTRQRGTHAVVGVCTADAP 195


>AE013599-53|AAM68374.1|  343|Drosophila melanogaster CG2944-PC,
           isoform C protein.
          Length = 343

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 51  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 110

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 111 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 170

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 171 PTRQRGTHAVVGVCTADAP 189


>AE013599-52|AAM68373.1|  363|Drosophila melanogaster CG2944-PD,
           isoform D protein.
          Length = 363

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 71  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 130

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 131 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 190

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 191 PTRQRGTHAVVGVCTADAP 209


>AE013599-51|AAM68372.1|  351|Drosophila melanogaster CG2944-PE,
           isoform E protein.
          Length = 351

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 59  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 118

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 119 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 178

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 179 PTRQRGTHAVVGVCTADAP 197


>AE013599-50|AAF57346.1|  349|Drosophila melanogaster CG2944-PA,
           isoform A protein.
          Length = 349

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 57  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 116

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 117 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 176

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 177 PTRQRGTHAVVGVCTADAP 195


>AE013599-49|AAG22337.2|  343|Drosophila melanogaster CG2944-PB,
           isoform B protein.
          Length = 343

 Score =  167 bits (407), Expect = 9e-42
 Identities = 78/139 (56%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
 Frame = +2

Query: 254 ALPKRARTRCRGMNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXX 430
           A+ +R    CRGMNMGQK+SGGVK+VSR +  + FK ++                     
Sbjct: 51  AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMP 110

Query: 431 XXXXXXQLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVW 610
                 QLKH+WN  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ W
Sbjct: 111 PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYW 170

Query: 611 PARQRGTHAVVGVATSHAP 667
           P RQRGTHAVVGV T+ AP
Sbjct: 171 PTRQRGTHAVVGVCTADAP 189


>AE013599-54|AAF57347.2|  281|Drosophila melanogaster CG2944-PF,
           isoform F protein.
          Length = 281

 Score =  157 bits (380), Expect = 2e-38
 Identities = 73/127 (57%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
 Frame = +2

Query: 290 MNMGQKLSGGVKSVSR-ECTAPFKAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKHAW 466
           MNMGQK+SGGVK+VSR +  + FK ++                           QLKH+W
Sbjct: 1   MNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKPARIDILLDMPPASRDLQLKHSW 60

Query: 467 NPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAVVG 646
           N  DRSLNIFVKE+D LTFHRHPVAQSTDCIRG+ G T+GLH WE+ WP RQRGTHAVVG
Sbjct: 61  NSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVG 120

Query: 647 VATSHAP 667
           V T+ AP
Sbjct: 121 VCTADAP 127


>AY118594-1|AAM49963.1|  255|Drosophila melanogaster LD47425p
           protein.
          Length = 255

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/69 (50%), Positives = 47/69 (68%)
 Frame = +2

Query: 458 HAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHA 637
           HAW+PND S N+++K  +  T HR+PVAQSTD  RG+ G+  G H WEV+W     GT A
Sbjct: 81  HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEG-PLGTVA 138

Query: 638 VVGVATSHA 664
           V+G++T  A
Sbjct: 139 VIGISTKEA 147


>AE013599-1668|AAM68601.1|  255|Drosophila melanogaster CG4643-PB,
           isoform B protein.
          Length = 255

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/69 (50%), Positives = 47/69 (68%)
 Frame = +2

Query: 458 HAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHA 637
           HAW+PND S N+++K  +  T HR+PVAQSTD  RG+ G+  G H WEV+W     GT A
Sbjct: 81  HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEG-PLGTVA 138

Query: 638 VVGVATSHA 664
           V+G++T  A
Sbjct: 139 VIGISTKEA 147


>AE013599-1667|AAF58404.1|  255|Drosophila melanogaster CG4643-PA,
           isoform A protein.
          Length = 255

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 35/69 (50%), Positives = 47/69 (68%)
 Frame = +2

Query: 458 HAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHA 637
           HAW+PND S N+++K  +  T HR+PVAQSTD  RG+ G+  G H WEV+W     GT A
Sbjct: 81  HAWSPNDCSRNVYIKP-NGFTLHRNPVAQSTDAARGKIGFRHGRHTWEVIWEG-PLGTVA 138

Query: 638 VVGVATSHA 664
           V+G++T  A
Sbjct: 139 VIGISTKEA 147


>AY069214-1|AAL39359.1|  293|Drosophila melanogaster GH26238p
           protein.
          Length = 293

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 464 WNPNDRSLNIFVKEEDALTFHRHPV-AQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAV 640
           W+   RS  + ++  ++ T H HP  ++ T  ++G+     G H WE+    R  GT  +
Sbjct: 67  WSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQGKRSLNNGRHYWELHVSQRVFGTSIM 126

Query: 641 VGVATSHA 664
            G+ T  A
Sbjct: 127 FGIGTKSA 134


>AF231038-1|AAF34807.1|  293|Drosophila melanogaster SP555 protein
           protein.
          Length = 293

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 464 WNPNDRSLNIFVKEEDALTFHRHPV-AQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAV 640
           W+   RS  + ++  ++ T H HP  ++ T  ++G+     G H WE+    R  GT  +
Sbjct: 67  WSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQGKRSLNNGRHYWELHVSQRVFGTSIM 126

Query: 641 VGVATSHA 664
            G+ T  A
Sbjct: 127 FGIGTKSA 134


>AE014134-850|AAF52206.1|  293|Drosophila melanogaster CG14041-PB,
           isoform B protein.
          Length = 293

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 464 WNPNDRSLNIFVKEEDALTFHRHPV-AQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAV 640
           W+   RS  + ++  ++ T H HP  ++ T  ++G+     G H WE+    R  GT  +
Sbjct: 67  WSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQGKRSLNNGRHYWELHVSQRVFGTSIM 126

Query: 641 VGVATSHA 664
            G+ T  A
Sbjct: 127 FGIGTKSA 134


>AE014134-849|AAF52205.2|  301|Drosophila melanogaster CG14041-PA,
           isoform A protein.
          Length = 301

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 464 WNPNDRSLNIFVKEEDALTFHRHPV-AQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAV 640
           W+   RS  + ++  ++ T H HP  ++ T  ++G+     G H WE+    R  GT  +
Sbjct: 67  WSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQGKRSLNNGRHYWELHVSQRVFGTSIM 126

Query: 641 VGVATSHA 664
            G+ T  A
Sbjct: 127 FGIGTKSA 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,843,163
Number of Sequences: 53049
Number of extensions: 365907
Number of successful extensions: 1014
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)