Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b08f
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...   134   6e-32
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...   119   2e-27
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    71   1e-12
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    29   4.1  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score =  134 bits (324), Expect = 6e-32
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 449 QLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRG 628
           Q +H+WNP DRSLNIFVK+ED  TFHRHPVAQSTDCIRG+ GY+RG H W++ WP RQRG
Sbjct: 111 QEQHSWNPEDRSLNIFVKDEDKFTFHRHPVAQSTDCIRGKMGYSRGFHVWQIEWPERQRG 170

Query: 629 THAVVGVATSHAP 667
           THAVVGVAT +AP
Sbjct: 171 THAVVGVATKNAP 183


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score =  119 bits (286), Expect = 2e-27
 Identities = 48/73 (65%), Positives = 59/73 (80%)
 Frame = +2

Query: 449 QLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRG 628
           Q +H+WNP+DRS NI VK++D LT +RHPV   TDCIRG+ GY+RG H W++ WP RQRG
Sbjct: 22  QEQHSWNPDDRSPNIIVKDQDKLTLYRHPVPNCTDCIRGKMGYSRGFHVWQIEWPERQRG 81

Query: 629 THAVVGVATSHAP 667
           THAVVGVAT +AP
Sbjct: 82  THAVVGVATKNAP 94


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +2

Query: 461 AWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRGLHCWEVVWPARQRGTHAV 640
           AWN +D S N +++  +  T HR PVAQSTD +RG+ G ++G+H +++ W     GT AV
Sbjct: 159 AWNTSDISRNNYIRT-NGFTVHRQPVAQSTDGVRGKRGISKGVHAFDITWDG-PLGTVAV 216

Query: 641 VGVATSHA 664
           VG+AT HA
Sbjct: 217 VGIATKHA 224


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 669 QGAWDVATPTTACVPRCRAGHTTSQQCSPRV*PVRPRMQSVLCATGC 529
           Q   +V   TT C P C+   T   Q +P V   +P+ Q   C + C
Sbjct: 69  QQTQNVQVQTTQCAPACQQSCTQQCQAAPSVAQCQPQCQQ-QCQSQC 114


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = -3

Query: 618 RAGHTTSQQCSPRV*PVRPRMQSVLCATGCRWNVSASSSLTNMFNDLSFGFH 463
           ++G    Q+C+ ++ PVR +   +LC+     NV  +S+++ +  +L+ G +
Sbjct: 238 KSGAIKEQKCAAKILPVRKKGNLLLCSL-LLGNVIVNSAISILMGELTTGIY 288


>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 IRGRTGYTRGLHCWEVVWPARQRGTHAVVGVA 652
           I G   +++G+H WEV        +  V+GVA
Sbjct: 626 ILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVA 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,127
Number of Sequences: 27780
Number of extensions: 175347
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)