Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b07f
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   5.4  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   7.2  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.2  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   7.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.5  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 107  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 241
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 119 EPMVNLDMKMKE-LCIMKLLDHILQPTMFEDIKEIAKEY-NIEKSCDKYMN-----VDVV 277
           +P+ +L +++KE L  +K L    Q    E I +   ++ N+ K   K +      +D+V
Sbjct: 298 QPLYDLTIQLKEELQSLKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLIDIV 357

Query: 278 KQFMEMYKMGM 310
           ++FM +Y  G+
Sbjct: 358 EKFMNVYFKGL 368


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 360 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLY 229
           SS  +S ++T +     + I Y+S+NCL  + +  L   F + +
Sbjct: 314 SSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFPIWF 357


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 221 AKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEE 361
           AK   I +SC KYMN D V Q  +M      P G+       + + E
Sbjct: 128 AKNLYICESCLKYMNSDHVLQRHKMKCSWSYPPGDEIYRDKNISIFE 174


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 128 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 235
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = -3

Query: 613 RVLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS 434
           ++LGG SH+       D AV +E  + L      ET+   S++   + +        P +
Sbjct: 264 QILGGHSHIR------DFAVYDEASVSLEGGRYCETVGWLSIDGLSASNATRQYVGRPVT 317

Query: 433 HPARSPHENI 404
           +  R  + N+
Sbjct: 318 NETRQSYPNL 327


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 347  LQMEEAVKVFRVLYYAKDFD 406
            L +E      R +YY+KDFD
Sbjct: 1164 LNLESKSTTLRTIYYSKDFD 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,182
Number of Sequences: 5004
Number of extensions: 45089
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)