Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b07f
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   1.9  
SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   5.7  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   7.6  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                28   7.6  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   7.6  
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)                      28   7.6  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 308 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 478
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 479 A 481
           +
Sbjct: 280 S 280


>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 197 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 373
           + ++I  I K++   K  +K MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 71  IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 419 TACWMRERINGGMFVYAFTAACFHR 493
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/64 (37%), Positives = 32/64 (50%)
 Frame = +3

Query: 447 TEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRTRSSGN 626
           TE   +T  LP    +PT   +  P+ T  IPT+  TAM+  KP   R     RTRS+ +
Sbjct: 306 TEKKPTTKQLPITEKKPTT--TKLPM-TEQIPTTKQTAMTEKKPTTER---KHRTRSTPD 359

Query: 627 TTAS 638
           T  S
Sbjct: 360 TPFS 363


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = +2

Query: 197 MFEDIKEIAKEYNI--EKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 370
           + ++I  I K++     K  +K MN++ +   ME Y   ML    TF+ + ++ M  +++
Sbjct: 645 IMKEIGAIVKKHTDVNSKGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLE 703

Query: 371 VFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTDCKGLYLPAPYEIYPYFF 550
              + Y +K F    R     R+    G++ Y +  + F R D K   LPA  + Y   +
Sbjct: 704 RLGLKYTSKSFK-GKRLDLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY 754

Query: 551 VDSHV 565
            D H+
Sbjct: 755 -DQHI 758


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 465 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 557
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
          Length = 289

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 586 HHKGFTDDMAVN-EEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHE 410
           H KG  + MA   +E  I    +    T    S  ++ S++ D H S    SH +R P  
Sbjct: 63  HEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDS 122

Query: 409 NIEVLS 392
           +   +S
Sbjct: 123 HRSCIS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,127
Number of Sequences: 59808
Number of extensions: 365148
Number of successful extensions: 1002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)