Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b05r
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0808 + 11412981-11413259 29 0.98
08_01_0034 - 253972-254916 27 2.3
06_01_1160 - 9868340-9868360,9868639-9868986 27 3.0
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 3.0
03_05_0733 - 27241021-27241767 26 5.2
01_05_0168 - 18865821-18866843 26 5.2
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 26 6.9
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139... 26 6.9
12_01_0258 - 1900564-1901101,1901838-1902004 25 9.2
10_08_0641 - 19518653-19518979 25 9.2
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 25 9.2
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757... 25 9.2
04_04_0007 + 22119477-22120004 25 9.2
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 25 9.2
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 25 9.2
>03_02_0808 + 11412981-11413259
Length = 92
Score = 28.7 bits (61), Expect = 0.98
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 219 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 115
+R +LR N + +F QQR M + PPR K G
Sbjct: 50 VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85
>08_01_0034 - 253972-254916
Length = 314
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 79 AHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLVVSAK*ISN 219
AH E HL G L S A + L D+ D+V K +S+
Sbjct: 263 AHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRKMLSD 309
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 204 RANNQIFKNVAQQRNMSVICTPPRNK 127
+A Q+ + A RNM VICT P K
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTPNYK 109
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 88 HQAGEEDHLTSGNL 129
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>03_05_0733 - 27241021-27241767
Length = 248
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 28 VAVMLDIDQHPGWDGRPAHHHQAGEEDHLTSGNLVS 135
+AV D+ G+ R H H DHL G+LV+
Sbjct: 56 LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91
>01_05_0168 - 18865821-18866843
Length = 340
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 96 GLMVVGWSAIPAWVL-VNIKHYRDK 25
G+ + GW+ +P W L + + HY K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 221 ELEIYFALTTKSLRMSPNKGT*ALSALRQETRFPE 117
ELE+ L+++ R+SP + AL ++E RF E
Sbjct: 488 ELEVLVGLSSQICRVSPKSFSKALEQGQKEARFVE 522
>01_02_0069 -
10813467-10813475,10813476-10813564,10813865-10813988,
10814227-10814305,10815298-10815388,10815808-10815904,
10816197-10816241,10816369-10816464
Length = 209
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 177 VAQQRNMSVICTPPRNKVSRGEMIFLAGL 91
+A++ + ++C PPR G MI G+
Sbjct: 158 IAEKNGLQLVCPPPRLCTDNGVMIAWTGI 186
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +1
Query: 64 WDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 165
W AH +A E D + + R A HVP
Sbjct: 28 WKAEAAHERRAAERDAMDGMGMGGTREAGADHVP 61
>10_08_0641 - 19518653-19518979
Length = 108
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 41 LILTNTQAGMADQPTTIRPARK 106
+ILT QAG + QP +I P K
Sbjct: 14 VILTTAQAGSSPQPESIGPLEK 35
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 43 DIDQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLGDILKDLV 195
D+D+ G+D + + E D L ++ S D + LGDI+ + +
Sbjct: 109 DVDEFDGFDAQSEYDGGVPEIDEEDEKALAAFMSKDTSSKRSLGDIILEKI 159
>04_04_1492 -
33974804-33975040,33975121-33975214,33975351-33975754,
33975855-33976747,33977014-33977167
Length = 593
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 109 HLTSGNLVSWRSADNAHVP 165
H SG+LV+W + DNA P
Sbjct: 82 HSVSGDLVNWAALDNALDP 100
>04_04_0007 + 22119477-22120004
Length = 175
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 61 GWDGRPAHHHQAGEEDHLTSGN 126
G GRPAHHH+ + + + G+
Sbjct: 132 GMRGRPAHHHRLMQGGYSSGGS 153
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +1
Query: 13 IILLLVAVMLDIDQHPGWDGRPAHHHQAGE 102
+ +L+ ++LD+ P W + AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 168 QRNMSVICTPPRNKVSRGEMIFLAGLMV 85
+ N +++ +PP + S E IF+AG+ V
Sbjct: 359 ENNTTIVSSPPSSCSSLHEDIFMAGMFV 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,189,065
Number of Sequences: 37544
Number of extensions: 152901
Number of successful extensions: 364
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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