Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b05r
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   0.84 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 76  VCHPSLGVGQYQALPRQAIKLSQKN 2
           +C P L +    A  +QA+++S  N
Sbjct: 429 ICKPKLKIADLSAHDKQAVRMSALN 453


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 98  ARKIISPLETLFLGGVQITLMFLCWATF 181
           +R+I S    + +    + L F+CWA F
Sbjct: 259 SRQIQSRKSVIKMLSAVVILFFICWAPF 286


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 103 PRRPDGGGLVCHPSLGVGQYQALPRQAIKLSQKN 2
           PRR +   L C P L  GQ Q+ P+   +  + N
Sbjct: 341 PRRKNNCPLHCKPEL--GQSQSSPKFVARREESN 372


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 125 TLFLGGVQITLMFLCWATF 181
           T  L  V IT  F+CWA F
Sbjct: 259 TRMLSAVVITF-FICWAPF 276


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 149 ITLMFLCWATFLKIWLLA 202
           +   F+CWA F    LLA
Sbjct: 291 VVAFFICWAPFHAQRLLA 308


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 78  WSAIPAWVLVNI 43
           W+A+PA V++ +
Sbjct: 326 WNAVPARVMIGV 337


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 78  WSAIPAWVLVNI 43
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 78  WSAIPAWVLVNI 43
           W+A+PA V++ +
Sbjct: 346 WNAVPARVMIGV 357


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 78  WSAIPAWVLVNI 43
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 304 LIDFHCQFYIKKFETTLR 251
           L+DF   FY ++F T  R
Sbjct: 54  LMDFTLDFYFRQFWTDPR 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,499
Number of Sequences: 438
Number of extensions: 1687
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)