Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b05f
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        29   1.5  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          27   3.5  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         27   3.5  
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 26   8.0  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  26   8.0  
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   26   8.0  
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 270 LILTNTQAGMADQPTTIRPARK-IISPLETLFLGGVQITLMFLCWA 136
           L+L   +AG+ +         K I+S + T+F+ G + T   LCWA
Sbjct: 614 LLLAKQEAGVENTTDQKYLEDKYIVSAISTVFIAGSETTATSLCWA 659


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 270  LILTNTQAGMADQPTTIRPARKIIS--PLETLFLGGVQITLM 151
            L + N      DQ T++  +  IIS  P ET   GGV+ITL+
Sbjct: 1415 LYVNNKGFARFDQATSVTSSANIISVTPTETGINGGVRITLV 1456


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 304 FVIILLLVAVMLDIDQHPGWDG 239
           FV  LL +   +DI+ HPGW G
Sbjct: 738 FVEFLLSLGWPVDIETHPGWTG 759


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 155 SVICTPPRNKVSRGEMIFLAGLMVV-GWSAIPAWVLVNIKH 274
           +V    P  K  R E  F   L+V  GWSA+ AWV  ++ H
Sbjct: 79  AVTANLPYPKTIRPE--FRVSLLVTSGWSAVTAWVKSSVTH 117


>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 125 FKNVAQQRNMSVICTPPRNKVSRGEMIFLAGL 220
           +  V + R MS++  P   ++ RG  +  AGL
Sbjct: 338 YSTVTRGRRMSIVVQPSTRRMRRGSSVAAAGL 369


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 176 RNKVSRGEMIFLAGLMVVGWSAIPAWVLVNIKH 274
           RNK  +GE+     L+V  WS +P     N KH
Sbjct: 213 RNKKRQGEICNACVLLVKRWSKLPPGTEKNWKH 245


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 121 NL*ECRPTKEHERYLHSAKKQGFQR*DDLPRRPDGGGLVCHPSLGVGQYQALPR 282
           +L EC+   ++E++  S +     R   LPR        CHP    G    L R
Sbjct: 42  SLKECKSQFQNEKWNCSVRFASSNRMPGLPRLAPSAAHYCHPDASKGSTGVLGR 95


>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 193 SGNLVSWRSADNAHVPLLGDIL 128
           SGNLVSWR   N+  P  GD++
Sbjct: 598 SGNLVSWRDLRNS--PRYGDVV 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,898
Number of Sequences: 59808
Number of extensions: 200171
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)