Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b05f
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 32 0.14
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 30 0.42
Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical pr... 29 0.98
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 1.7
AF098997-10|AAC68712.2| 325|Caenorhabditis elegans Serpentine r... 27 3.0
AF067211-8|ABB51202.1| 99|Caenorhabditis elegans Hypothetical ... 27 5.2
Z83731-6|CAN86605.2| 208|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z83731-5|CAN86604.2| 223|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 26 6.9
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 26 6.9
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 26 6.9
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 26 6.9
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 26 6.9
AF098997-9|AAC68720.1| 325|Caenorhabditis elegans Serpentine re... 26 9.1
>AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical
protein H23L24.4 protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 123 IWLLARSKFLIPNILF*YNYSSKCSLKFFYVKLTM 19
+W SK+L+PN +F Y SS C+ + +V L +
Sbjct: 35 LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFVILRL 69
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 30.3 bits (65), Expect = 0.42
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 113 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 223
N + F+N+ Q+ V+ PP+N S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609
>Z49907-1|CAA90090.1| 417|Caenorhabditis elegans Hypothetical
protein B0491.1 protein.
Length = 417
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 249 PGCWSISSIT-ATSNKIITKKYVVYYVL 329
P CW I++ T NK+ T +Y V+Y++
Sbjct: 311 PFCWFITTFAFVTYNKVCTSQYFVWYIV 338
>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
protein Y70C5A.2 protein.
Length = 1037
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 183 LFLGGVQITLMFLCWATFLKIWLLA 109
LFL G+Q+TL+F C+ FL I LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237
>AF098997-10|AAC68712.2| 325|Caenorhabditis elegans Serpentine
receptor, class i protein43 protein.
Length = 325
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 192 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 76
+ T L G+Q L+FLC+A + + +IP ILF
Sbjct: 91 ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129
>AF067211-8|ABB51202.1| 99|Caenorhabditis elegans Hypothetical
protein B0205.13 protein.
Length = 99
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 256 HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 146
HP W+ HHHQ + H + N V+ ++A + +P
Sbjct: 54 HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86
>Z83731-6|CAN86605.2| 208|Caenorhabditis elegans Hypothetical
protein M04C9.1b protein.
Length = 208
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 226 HHQAGEEDHLTSGNLVSWRSADN 158
+HQ E+ +L GN VS S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122
>Z83731-5|CAN86604.2| 223|Caenorhabditis elegans Hypothetical
protein M04C9.1a protein.
Length = 223
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 226 HHQAGEEDHLTSGNLVSWRSADN 158
+HQ E+ +L GN VS S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 211 RRPDGGGLVCHPSL 252
RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 211 RRPDGGGLVCHPSL 252
RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 222 IRPARKIISPLETLFLGGVQITL 154
+RP+ ++ +P E+LF+GG +T+
Sbjct: 11 VRPSARLGAPSESLFVGGRVVTI 33
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 222 IRPARKIISPLETLFLGGVQITL 154
+RP+ ++ +P E+LF+GG +T+
Sbjct: 11 VRPSARLGAPSESLFVGGRVVTI 33
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 215 GLMVVGWSAIPAWVLVNIKHYRDKQ*NYHKKICSLLRSK*NVNLNQKK 358
G + + WS+ W + KH RD Q Y K+ L R +N QKK
Sbjct: 412 GYLTLCWSSNLEWSIEEYKHSRDTQ--YLNKLEELRR---KINEKQKK 454
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 222 IRPARKIISPLETLFLGGVQITL 154
+RP+ ++ +P E+LF+GG +T+
Sbjct: 9 VRPSARLGAPSESLFVGGRVVTI 31
>AF098997-9|AAC68720.1| 325|Caenorhabditis elegans Serpentine
receptor, class i protein42 protein.
Length = 325
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 171 GVQITLMFLCWATFLKIWLLARSKFLIPNIL 79
GVQ L+FLC+A + + + +IPN L
Sbjct: 98 GVQYVLLFLCFARRHQAIAKIKQQHVIPNFL 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,989,521
Number of Sequences: 27780
Number of extensions: 157100
Number of successful extensions: 379
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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