Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b04f
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   0.81 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect(2) = 0.81
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = +1

Query: 409 AVISTCFSPSGKKLASGSGDTTVRFWDLNTQTPLHVCKGHSNWVLCISWSP 561
           + +  C SP     ASGSG         N QT     +  SN     S+ P
Sbjct: 586 SAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKP 636



 Score = 21.0 bits (42), Expect(2) = 0.81
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 187 KINFN*YVMHFYKRKINHSSFFVKDVEITTTIKD 288
           ++N+N  +  F+K K   ++ +  D EI  +  D
Sbjct: 544 QLNYNENIERFFKSKPPVATMYGSDEEIINSSND 577


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 385 SSIPGHAEAVISTCFSPSGKKLASGSGDTTVRFWDLNTQTPLHVCKGHSNWVLCISWSPD 564
           +S+ G +   + T  +P G ++   +   T+ F    T T    C    N +  +SW  D
Sbjct: 291 NSVGGESVETVLTVTAPLGAEIEPST--QTIDFGRPATFT----CNVRGNPIKTVSWLKD 344

Query: 565 GKKL 576
           GK L
Sbjct: 345 GKPL 348


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 340  DILSLQPLHYSRSLGPMHP 284
            DIL+L+PL   +   PM P
Sbjct: 1046 DILNLRPLSMEKGTRPMIP 1064


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 288 ILYCGCYFNIFHKKRGMVYLPLVKVHYISVEVDLWLYLGANPMDFPF 148
           I+Y   YF  +   RGM+  P      IS  +   +   A  + +PF
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 288 ILYCGCYFNIFHKKRGMVYLPLVKVHYISVEVDLWLYLGANPMDFPF 148
           I+Y   YF  +   RGM+  P      IS  +   +   A  + +PF
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPF 233


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 524  PLHTCRGVCVFRSQNLTVVSPEP 456
            P ++C  V V + Q L   SP+P
Sbjct: 1270 PAYSCGTVSVPQQQQLPPSSPQP 1292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,490
Number of Sequences: 438
Number of extensions: 3529
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)