Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b03r
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   9.0  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  

>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 452 VYCITLKSV--YVGIGSKFCELIITCNAAWGLTCFCGKE*RGRIRLV*VLFFDTHTTATY 279
           V C T  ++  ++ +   + +  + C     +   C +  +   R+      DTHT++T 
Sbjct: 105 VLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164

Query: 278 LLLWIY 261
            L+W Y
Sbjct: 165 PLIWRY 170


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 VISSQNTILTCDGVDSNSSIACRQ 173
           VIS++N I+T  G+DS+    C Q
Sbjct: 388 VISAENKIVTYGGMDSHVHFICPQ 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,663
Number of Sequences: 5004
Number of extensions: 52296
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)