Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b03r
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 544 THCESS*ERGNPCCRRPSAASRGD 615
           THCE     GN CC  P A++  D
Sbjct: 253 THCEKERRDGNKCCSGPLASTMRD 276


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 544 THCESS*ERGNPCCRRPSAASRGD 615
           THCES    GN CC    AA+  D
Sbjct: 269 THCESGKRDGNKCCDARLAATMRD 292


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 323 DESSPFTPFHRNMSIPRQR 379
           D S+ FTPFH+N+++P  R
Sbjct: 502 DCSTTFTPFHKNVTVPVTR 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,594
Number of Sequences: 27780
Number of extensions: 285667
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)