Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b02r
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    29   3.0  
12_02_0526 - 20032206-20033106,20034853-20035181                       29   5.2  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    29   5.2  
08_02_1447 - 27162037-27162627,27162790-27162920,27163277-271634...    28   9.1  

>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 284 LFTRITTCLCEIIWTYLNINNLMQISKRKAFEKINVVCPAEFIL 415
           L+ R+   +C       N+NNL  +   + F +  + C AE +L
Sbjct: 414 LYYRVLEAICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVL 457


>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 571 SSSHDCNVLVNNRISESCFSSILNSSENV 657
           S+S+  N   NN IS SC  S++NSS N+
Sbjct: 329 SNSNKNNSDNNNNISSSCCISLMNSSSNM 357


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 284 LFTRITTCLCEIIWTYLNINNLMQISKRKAFEKINVVCPAEFIL 415
           L+ R+   +C      L+ NNL  +   + F +  + C AE +L
Sbjct: 507 LYYRVLESMCRAETQILSGNNLTSLLSNERFHRCMIACSAELVL 550


>08_02_1447 -
           27162037-27162627,27162790-27162920,27163277-27163474,
           27164038-27164065
          Length = 315

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 586 CNVLVNNRISESCFSSILNSSENVTSITNLTIPYC 690
           CN     + SE C++S  +S+  +  +TN  +PYC
Sbjct: 190 CNA--TKKHSERCYASQGSSTNGLKRVTNPELPYC 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,056
Number of Sequences: 37544
Number of extensions: 263735
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)