Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b02r
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical ...    29   4.6  

>U50307-4|AAA92305.1|  413|Caenorhabditis elegans Hypothetical
           protein F43H9.3 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 586 CNVLVNNRISESCFSSILNSSENVTSITNLTIPYCCDLKHK 708
           C VL  +  S  C S   +S+ENV  I+NL  PY   +K K
Sbjct: 10  CRVLQQSFASSECISHPSSSNENVKPISNL--PYVDYIKKK 48


>AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical
           protein M01D1.8 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 169 IVKFCRLLISNRTVQLVY-FCTKIVTTLFKNFTT*FSILKAKIVNRNNYFCILR 11
           I + C  L+SN+T QL+  F T     L+  F+  F        NRN+Y+C+L+
Sbjct: 27  IEQVCISLLSNKTKQLIRDFGTFKKIKLYIGFSG-FVEFMFSDSNRNSYYCVLK 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,903
Number of Sequences: 27780
Number of extensions: 299337
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)