Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b02f
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499...    29   3.9  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    29   3.9  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    28   6.8  

>10_02_0078 -
           4992019-4992594,4993156-4993248,4995984-4996202,
           4996282-4996345,4996429-4996485,4996573-4996671,
           4997296-4997327
          Length = 379

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 384 INAATIEKTIAQCRYWVLSAIAT 452
           +N   IEK I  C+YW+L A+ T
Sbjct: 29  LNKPEIEKLIFWCQYWILVALLT 51


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 INAATIEKTIAQCRYWVLSAIATSSVITQDTTMTAVP 494
           +N   IE+ I  C+YW+L A+ T      D T++ +P
Sbjct: 82  LNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLP 118


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +2

Query: 374 PDDNKCCYNRKDDCSVPILGTLCYCDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQ 553
           P  ++CC++R + C+V  +         C      DD       V  PP++ S +  Y  
Sbjct: 526 PPTSRCCHHRYEICAVATVAVAP-----CSRAVVADDVAAS-SAVPPPPRVCSATAGYRY 579

Query: 554 QTYAP 568
             Y+P
Sbjct: 580 PKYSP 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,608
Number of Sequences: 37544
Number of extensions: 296992
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)