Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b02f
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 33 0.22
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 33 0.22
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 33 0.22
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 33 0.22
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 33 0.22
Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical pr... 31 0.50
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 31 0.87
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 30 1.2
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 30 1.2
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81111-2|CAB03266.1| 535|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF040661-12|AAG24221.1| 210|Caenorhabditis elegans Hypothetical... 28 6.1
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00066-2|AAA50741.2| 248|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/87 (42%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +2
Query: 353 GRYCAARPDDNKCCYNRKDDCSVPILGT-LCYCDEFCDH-TRHHDDCCPDYKKVCSPPQI 526
G YC+ R + CC NR DDC+VPILG LCYCD FCD +DCCPD++ C I
Sbjct: 67 GDYCSVRT--HTCCENRDDDCTVPILGDHLCYCDMFCDRGPDGGNDCCPDFEATCRGKDI 124
Query: 527 TSVSCEYEQQTYAPDDQVNKGCNLCTC 607
+ + D K C CTC
Sbjct: 125 QNDQRIDGESCSMDGDTKEKNCEKCTC 151
>Z92809-3|CAB07269.1| 440|Caenorhabditis elegans Hypothetical
protein R17.3 protein.
Length = 440
Score = 33.9 bits (74), Expect = 0.093
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = +2
Query: 440 CYCDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKGCNLCTCK 610
CYCDE C DCC DY VC PP+ V +++ T D N C + T K
Sbjct: 219 CYCDEHCVTL---GDCCSDYTFVC-PPR-DCVLTDWDSWTQCTAD--NGTCGIGTQK 268
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 724 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 761
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 658 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 695
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 724 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 761
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 658 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 695
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 658 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 695
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSCEYEQQTYAPDDQVNKG-CNLCTC 607
CCP VCS +S C Y+ YA +Q G C+ C+C
Sbjct: 658 CCP----VCSDALSSSAVCSYQSSVYAIGEQWQDGRCSNCSC 695
>Z70757-1|CAA94805.1| 497|Caenorhabditis elegans Hypothetical
protein ZK287.1 protein.
Length = 497
Score = 31.5 bits (68), Expect = 0.50
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Frame = +2
Query: 380 DNKCC--YNRKDDCSV---PILGTLCYCDEFCDHTRHHDDCCPDYKKVCS----PPQITS 532
+N CC + CS P + CDE C+ TR+ DC CS P +
Sbjct: 9 NNYCCECVASQGRCSADTCPCVAARKTCDEHCESTRYRGDCLNQAICKCSCEVDPAKPAK 68
Query: 533 VSCEYEQQTYAPDDQVNKGCN-LCTCK 610
+C ++ ++ +GC+ LC CK
Sbjct: 69 NACAKSERCDCL--RIKEGCSKLCACK 93
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +2
Query: 335 GPELLNGRYCAARPDDNKCCYNRKDDCSVPILGTLCYCDEFCDHTRHHDDCCPDYKKVCS 514
GPE N +R +CC+ ++ C + + C C + D C + C
Sbjct: 63 GPETRNETAAVSRAK-RQCCFAAQNSCCPQQVQSQCNCAALQIQVQQCD-CANMLQTQCG 120
Query: 515 PPQITSVSCE 544
P I+S SC+
Sbjct: 121 CPSISSPSCD 130
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
C37C3.6c protein.
Length = 1487
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 446 CDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQQTYAPDDQ-VNKGCNLCTC 607
C E C T+ CCPD K CE+ Q PD + V KG C
Sbjct: 937 CGENCLTTKF--GCCPDGKTTAKGSHNEGCGCEFAQYGCCPDGKSVAKGAGFYGC 989
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
C37C3.6a protein.
Length = 1558
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 446 CDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQQTYAPDDQ-VNKGCNLCTC 607
C E C T+ CCPD K CE+ Q PD + V KG C
Sbjct: 937 CGENCLTTKF--GCCPDGKTTAKGSHNEGCGCEFAQYGCCPDGKSVAKGAGFYGC 989
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 446 CDEFCDHTRHHDDCCPDYKKVCSPPQITSVSCEYEQQTYAPDDQ-VNKGCNLCTC 607
C E C T+ CCPD K CE+ Q PD + V KG C
Sbjct: 937 CGENCLTTKF--GCCPDGKTTAKGSHNEGCGCEFAQYGCCPDGKSVAKGAGFYGC 989
>Z81111-2|CAB03266.1| 535|Caenorhabditis elegans Hypothetical
protein T01G5.2 protein.
Length = 535
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 503 SCNRDSSHRGVLCDHRTRRNSREYPISALSNRLFDCS 393
+ N + HRG +C H+++ + E A + LFD S
Sbjct: 407 NANTLARHRGAICLHKSQMKNTEVLKKAFKSVLFDAS 443
>AF040661-12|AAG24221.1| 210|Caenorhabditis elegans Hypothetical
protein W10G11.14 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 323 LAYSGPELLNGRYCAARPDDNKCCYNRKDDCSVPILGTLC 442
LA P +LN +Y AA DD C + D + + G +C
Sbjct: 165 LASKTPTILNDQYFAATLDDTNCDGMLEGDAARVLRGYIC 204
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 485 CCPDYKKVCSPPQITSVSC 541
CCP +KVC+ P+ + V C
Sbjct: 247 CCPAKEKVCNMPRNSGVQC 265
>U00066-2|AAA50741.2| 248|Caenorhabditis elegans Hypothetical
protein R12B2.3 protein.
Length = 248
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 360 YRPLSNSGPEYAKQDDSNGRTKTTRNMFAI 271
+RPL SG + DDSNG +T ++ ++
Sbjct: 29 FRPLDLSGKRLVRPDDSNGTRSSTDDVHSM 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,968
Number of Sequences: 27780
Number of extensions: 292929
Number of successful extensions: 870
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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