Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b01r
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   6.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   9.0  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 410 LKTFQDTNYCVLYFINLSLDFNCLGTNL-FSCLILVSL 300
           L+ F+  NY   Y  N   DF+  G  L  S LI +SL
Sbjct: 7   LEQFELNNYFGFYLFNYHFDFSNFGFYLGLSALIAISL 44


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 614  EENLEITKLTRETKCKQDIYKIWPSQRWELKKNRTYTY 727
            E N  + +L ++T C  DI  I      E K NRTY Y
Sbjct: 1128 EINRIVDELWKQTYCGTDIDTILIRSDSEGKGNRTYNY 1165


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = +1

Query: 235 PFA*GEYVLSNPIQHILVSFKFNETKIRHENRFVPRQLKSRDKLIKYKTQ*LVS*NVFNK 414
           P+A  +  +   IQ    S+K + T IR  N + PRQ +  +KLI   T   +   +  K
Sbjct: 173 PYAASKAAVDLIIQSYRYSYKISVTVIRANNVYGPRQYE--EKLIP-MTLGKLKKFINQK 229

Query: 415 SQ*LNSIKPLKFISLSTNGKYKTKY 489
           SQ +   K    I+L  +G +K KY
Sbjct: 230 SQKIMQDK----ITLHGDGLHKRKY 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,168
Number of Sequences: 5004
Number of extensions: 57781
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)