Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b01f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.71 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   0.94 
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   1.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.9  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   2.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   3.8  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   6.6  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   6.6  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.8  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 29   STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 157
            + YL   + CIDFFV V++  N ++A    +   SR +   KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 286 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 122
           N L P         +   +S+F S++ T I   N  T + L CSFD +  +  ID
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 110 ENKYIYQSRLWNCIK 154
           ENK++++S  WNC++
Sbjct: 14  ENKFVFRSSSWNCVR 28


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 464  YNLDDMSYSLEEAENMDLRENI 529
            Y++ D SYS+ E  + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +2

Query: 23  INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 202
           I+S   L+N   I  +++     +EI   ENK+I    L N I++ L   C G+I K   
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452

Query: 203 GDISAPKG 226
             IS  KG
Sbjct: 453 IPISGLKG 460


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +2

Query: 80  SILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNNGDISAPKGRGRGWQMNNQA 259
           +I A+E   YEN  +  SRL+          CR +   +N G   A  G  R    +N  
Sbjct: 279 TIDAHESSLYEN--VNDSRLYEV------PACRNMA--LNTGYSDADPGYLRTSFRSNSH 328

Query: 260 RELRRPKAVSDEPKVDTSKSKLSADAK--EWYPANYTSQALPAYNTEPAPYRPS 415
             L  P + ++E  V  +   +S  +     Y ++    ++P Y  EP P RPS
Sbjct: 329 NSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPS 380


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 338 KEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMS 484
           K  +PA+Y+S A    N +   +   + S+ G  ++ + + P NL   S
Sbjct: 422 KSIFPASYSSSAEDGQNMQAPAHAYMQSSIYGVNQEQKSEYPSNLSMQS 470


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 473 DDMSYSLEEAENMDLRENIANLITVMCE 556
           DD S+   + E+  +RE   + I V+CE
Sbjct: 7   DDFSFEKRKTESQRIREKYPDRIPVICE 34


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +2

Query: 242 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 421
           Q +++A  + R  ++    + D S ++  A A+   P N  S +  +  T+ +      P
Sbjct: 225 QPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYTKQSGTAGVLP 284

Query: 422 SVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 514
           +V   +  A   NP    D+S     A+N D
Sbjct: 285 AVNADIDAANRMNP----DISSQFPIADNKD 311


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 305 DTSKSKLSADAKEWYP-ANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPY 466
           + +K+K  A+     P A   S +    + +P+ Y  +R      LRQ +D NPY
Sbjct: 41  ELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRTIMELRQTKDPNPY 95


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 269 RRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 403
           RR ++ SDE +     S +S ++   + +  +  + P+  T P P
Sbjct: 320 RRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,316
Number of Sequences: 5004
Number of extensions: 55463
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)