Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b01f
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198... 32 0.42
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 29 2.2
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 29 3.0
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 29 3.0
08_01_0982 - 9947192-9947474,9948649-9948950 29 3.9
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 5.2
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 28 6.8
01_07_0177 - 41776168-41776314,41776395-41776456,41777029-417771... 28 6.8
04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817... 27 9.0
02_01_0100 + 743467-744868,745066-745127 27 9.0
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 27 9.0
>04_04_0235 +
23819060-23819114,23819486-23819542,23819707-23819808,
23820162-23820238,23820347-23820470,23820730-23820794,
23821827-23821896,23822395-23822470,23822597-23822687,
23822767-23822889
Length = 279
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 284 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 415
++DEP + KL D KE AN TS+A P P+ P+
Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPA 238
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +3
Query: 363 LLKRYPLTTL-NLPHIDHLAPLY 428
LL+ +PLT L +L H+DH+ PLY
Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 272 RPKAVSDEPKVDTSKSK-LSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQA 448
+P + P ++S S + A A + P YT+ LP Y + Y P PS+Q L
Sbjct: 36 QPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAP 95
Query: 449 QDQN 460
D +
Sbjct: 96 YDHH 99
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 PKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP 397
P G +G + N K D +VD + S D + Y + A+ +
Sbjct: 211 PPGFRKGLDLGNLKEYKSHWKCYQDGERVDEQSTSSSNDTMDKYSVQFDDLFKIAWEEDS 270
Query: 398 APYRPSRPSVQGRL--RQAQDQNPYNLDDMSYSLEEAENMDLRE 523
P VQ + + D + N+ + + E EN+D+ +
Sbjct: 271 DDKVPREDHVQQLVGDEETNDVDKQNISKLQNASETIENLDIEK 314
>08_01_0982 - 9947192-9947474,9948649-9948950
Length = 194
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 200 NGDISAPKGRGRGWQMNNQARELR 271
NGD+ AP G G+G N RE R
Sbjct: 134 NGDLRAPSGGGQGLGSRNTCREAR 157
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 503 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 417
++L V +C P CM+ +LD++ LV RG
Sbjct: 57 RVLMVLMSCCPICMNLYFDLDDIELVFRG 85
>02_01_0170 -
1174224-1174321,1174429-1174588,1174673-1174823,
1175005-1175156,1175647-1175768,1176773-1176785
Length = 231
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 62 DFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL 163
DF Y ++AN++ YE + Y L N ++ ++
Sbjct: 130 DFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSM 163
>01_07_0177 -
41776168-41776314,41776395-41776456,41777029-41777191,
41777278-41777375,41777911-41777992,41778391-41778512,
41778645-41778722,41778873-41779026,41779629-41779767,
41780453-41780820
Length = 470
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 227 RGRGWQMNNQARELRRPKAVSDEPKV 304
RG GWQ E+ RP ++ +P+V
Sbjct: 56 RGPGWQREKLPAEIPRPSTIAFQPRV 81
>04_01_0622 -
8175226-8175312,8175674-8175763,8176370-8176457,
8177021-8177095,8177754-8177821,8177898-8177955,
8178862-8178942,8179968-8180038,8180144-8180225,
8182327-8182449,8183023-8183129,8183201-8183263,
8183877-8183936,8184100-8184151,8185566-8185598,
8185820-8185871,8185965-8186028,8186693-8186749,
8186962-8187006,8187083-8187190,8188147-8188212,
8188382-8188492,8190841-8191035,8191419-8191499,
8191591-8191630,8191764-8191816
Length = 669
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 437 LRQAQDQNPYNLDDMSYSLEEAENMDLRENIANLITVMC-EITFD 568
L Q ++P N+DDM E + L + +L+T MC ++T++
Sbjct: 205 LNSMQQEDPVNMDDM--GTPEINTVILLDREVDLVTPMCSQLTYE 247
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 310 SIHLWFV*NCL-RPPELACLVVHLPPPASSFWSTNITV 200
SIH+ F CL RPP L+ L VH P P + TV
Sbjct: 69 SIHVSF---CLARPPRLSYLCVHCPRPGDGEGAYRFTV 103
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 302 PLVRLKLP*AAGARVPGCSFATPGLVLLEH*Y 207
PL RL LP A RVP S ++ LEH Y
Sbjct: 101 PLRRLALPACAHRRVPPSSSIAKSILQLEHDY 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,600
Number of Sequences: 37544
Number of extensions: 369483
Number of successful extensions: 1131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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