Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b01f
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 4.6
Z69360-1|CAA93283.1| 390|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 28 6.1
Z92809-4|CAI06053.1| 615|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z48367-3|CAE17722.1| 194|Caenorhabditis elegans Hypothetical pr... 27 8.1
U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated ... 27 8.1
U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated k... 27 8.1
D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase ... 27 8.1
AM748822-1|CAO72176.1| 591|Caenorhabditis elegans hexosaminidas... 27 8.1
AL023839-4|CAA19506.2| 615|Caenorhabditis elegans Hypothetical ... 27 8.1
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 27 8.1
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 27 8.1
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 27 8.1
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical
protein T24D5.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 276 LRQFQTN-QRWILLNRSYQQMLKNGTLQITLLKRYPLTTLNLPHIDHLAPLYKVDFVKLK 452
LR F T +R + L +S ++L + + I L+ L L + DH LY + K+K
Sbjct: 209 LRAFSTEVKRRVYLEKS--EVLDDQPIAIEFLE-LRLGQLLDGNDDHAVTLYTLMSNKIK 265
Query: 453 IKIHTIWMTCLIHLK 497
I++ T+ ++ ++HL+
Sbjct: 266 IELDTVLLSLILHLE 280
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +2
Query: 281 AVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 415
A S P D S S A W A Y SQA AY+ EPA P+
Sbjct: 507 AASTGPSYDQS-SAAGGYAASW-DAYYASQAQSAYSAEPASTYPT 549
>Z69360-1|CAA93283.1| 390|Caenorhabditis elegans Hypothetical
protein F25H8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 332 DAKEWYPANYTSQALPAY--NTEPAPYRPSRPSVQGRLRQAQDQNPY 466
D + +++Q PA N P P +PS P R Q+ + NPY
Sbjct: 329 DRRGGQKVRFSAQNPPARSDNLGPIPQQPSAPPPPARPAQSTESNPY 375
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 290 LKLP*AAGARVP-GCSFATPGLVLLEH*YHRY 198
L L A+G P G SF +PGLV H HRY
Sbjct: 55 LLLERASGVASPSGTSFHSPGLVSASHPAHRY 86
>Z92809-4|CAI06053.1| 615|Caenorhabditis elegans Hypothetical
protein Y39A1C.4 protein.
Length = 615
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 428 QGRLRQAQDQNPYNLDDMSYSLEEAENMDLR 520
+GRLR A ++N Y+++ + + L+EA+ L+
Sbjct: 154 KGRLRGAINKNAYSMETVEHILQEAQKHHLQ 184
>Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical
protein M142.2 protein.
Length = 572
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 485 YSLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGP 598
+++E E +D R +L MC+ F PG + +CGP
Sbjct: 200 FTVESFEQLD-RALADSLTWSMCKTEFRPGTPEIICGP 236
>Z48367-3|CAE17722.1| 194|Caenorhabditis elegans Hypothetical
protein C33B4.5 protein.
Length = 194
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 218 PKGRGRGWQMNNQ-ARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTE 394
P R W+ NQ + E R + + PK S + K W A T+ + Y+ E
Sbjct: 115 PYNRVVNWRRQNQFSSEESRVETTTTTPK----PSVPAVTPKSW--AKTTTASASGYSAE 168
Query: 395 PAPYRPSR 418
PA + PSR
Sbjct: 169 PALFLPSR 176
>U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated
kinase family protein1, isoform c protein.
Length = 523
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPS 415
Q++ Q ++ + P+AV D K T + ++W Y N P+Y +P PY S
Sbjct: 57 QISKQEQQ-QNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTS 112
Query: 416 RPSVQG-RLRQAQDQNP 463
G +++ + NP
Sbjct: 113 SLPYHGNKIQDPRKMNP 129
>U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated
kinase family protein1, isoform b protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPS 415
Q++ Q ++ + P+AV D K T + ++W Y N P+Y +P PY S
Sbjct: 103 QISKQEQQ-QNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTS 158
Query: 416 RPSVQG-RLRQAQDQNP 463
G +++ + NP
Sbjct: 159 SLPYHGNKIQDPRKMNP 175
>D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase
protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEW--YPANYTSQALPAYNTEPAPYRPS 415
Q++ Q ++ + P+AV D K T + ++W Y N P+Y +P PY S
Sbjct: 103 QISKQEQQ-QNPQAVLDALKYYTQGE---SSGQKWLQYDMNDAPSRTPSYGLKPQPYSTS 158
Query: 416 RPSVQG-RLRQAQDQNP 463
G +++ + NP
Sbjct: 159 SLPYHGNKIQDPRKMNP 175
>AM748822-1|CAO72176.1| 591|Caenorhabditis elegans hexosaminidase
protein.
Length = 591
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 428 QGRLRQAQDQNPYNLDDMSYSLEEAENMDLR 520
+GRLR A ++N Y+++ + + L+EA+ L+
Sbjct: 154 KGRLRGAINKNAYSMETVEHILQEAQKHHLQ 184
>AL023839-4|CAA19506.2| 615|Caenorhabditis elegans Hypothetical
protein Y39A1C.4 protein.
Length = 615
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 428 QGRLRQAQDQNPYNLDDMSYSLEEAENMDLR 520
+GRLR A ++N Y+++ + + L+EA+ L+
Sbjct: 154 KGRLRGAINKNAYSMETVEHILQEAQKHHLQ 184
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 194 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 373
M+NG++SA G G + ++ + +P S+S ++ A+ S
Sbjct: 1153 MHNGNLSAAPGAPAGDPKHYRSSSA---SDLQHDPNASFSQSSMTGSARSSVFDKLPSHY 1209
Query: 374 LPAYNTEPAPYRPSRPSVQ--GRLRQAQDQNP 463
++T P +P+RPS Q LR+A +P
Sbjct: 1210 --RHSTRPTVIQPTRPSAQSPSALRKAAAASP 1239
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 194 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 373
M+NG++SA G G + ++ + +P S+S ++ A+ S
Sbjct: 171 MHNGNLSAAPGAPAGDPKHYRSSSA---SDLQHDPNASFSQSSMTGSARSSVFDKLPSHY 227
Query: 374 LPAYNTEPAPYRPSRPSVQ--GRLRQAQDQNP 463
++T P +P+RPS Q LR+A +P
Sbjct: 228 --RHSTRPTVIQPTRPSAQSPSALRKAAAASP 257
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 194 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 373
M+NG++SA G G + ++ + +P S+S ++ A+ S
Sbjct: 1151 MHNGNLSAAPGAPAGDPKHYRSSSA---SDLQHDPNASFSQSSMTGSARSSVFDKLPSHY 1207
Query: 374 LPAYNTEPAPYRPSRPSVQ--GRLRQAQDQNP 463
++T P +P+RPS Q LR+A +P
Sbjct: 1208 --RHSTRPTVIQPTRPSAQSPSALRKAAAASP 1237
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 194 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 373
M+NG++SA G G + ++ + +P S+S ++ A+ S
Sbjct: 1151 MHNGNLSAAPGAPAGDPKHYRSSSA---SDLQHDPNASFSQSSMTGSARSSVFDKLPSHY 1207
Query: 374 LPAYNTEPAPYRPSRPSVQ--GRLRQAQDQNP 463
++T P +P+RPS Q LR+A +P
Sbjct: 1208 --RHSTRPTVIQPTRPSAQSPSALRKAAAASP 1237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,317
Number of Sequences: 27780
Number of extensions: 319207
Number of successful extensions: 919
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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