Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a24r
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   8.5  
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223...    28   8.5  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   8.5  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   8.5  

>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 480 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 587
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>07_01_0317 +
           2229894-2230137,2231142-2231233,2231327-2231364,
           2231695-2231717,2232026-2232132,2232208-2232370,
           2232581-2232663,2232775-2232837,2233049-2233072,
           2233119-2233304
          Length = 340

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 116 GARYDRERLGRPQGRWNNDGEVAGLPDIY 30
           GA      LGRP G W N+G + GL D Y
Sbjct: 115 GAINSESLLGRP-GIWGNEGYLDGLGDAY 142


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 235 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELG 107
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 712  QDLEEKLYNSILTGXYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKLWVG 533
            Q LE    N I+T   D  +RQ L        S++ N++ +  +D  +  +E C  +WVG
Sbjct: 1147 QLLELGKNNEIVT---DQVLRQELALVMPKIYSLLSNLIGSDEMDIVKVVLEGCRWIWVG 1203

Query: 532  NG 527
            +G
Sbjct: 1204 DG 1205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,637,982
Number of Sequences: 37544
Number of extensions: 384140
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)