Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a24r
         (718 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070586-1|AAL48057.1|  421|Drosophila melanogaster RE68879p pro...    30   2.7  

>AY070586-1|AAL48057.1|  421|Drosophila melanogaster RE68879p
           protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 21/51 (41%), Positives = 25/51 (49%)
 Frame = -3

Query: 176 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQGRWNNDGEVAGLPDIYSW 24
           R+  +RRPV   QSP  RC G R   +R  R Q R NN  +     D Y W
Sbjct: 178 RRPTERRPVRRSQSPRDRCHGGRDLDQRRQRNQ-RHNNSNK--NEDDHYVW 225


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,962,130
Number of Sequences: 53049
Number of extensions: 659852
Number of successful extensions: 1824
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)