Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a23r
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.046
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.18
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.24
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.43
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.74
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.74
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.74
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.3
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.0
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.0
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 27 3.0
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 4.0
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 5.2
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 6.9
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 6.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.2
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.1 bits (72), Expect = 0.046
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = -1
Query: 745 NVKLLKGRRIIEERCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDME 566
N L R ++ G ID++ +++KR Y ++ ++ LE ++R + E
Sbjct: 822 NTNLYLRRNPLKAEIGSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSE 881
Query: 565 ISDLNSQVNDL 533
ISD +++ L
Sbjct: 882 ISDKRNELESL 892
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 742 VKLLKGRRIIEERCGKPKNIDDAN---EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 572
+K + G +I E R + I D + I + + ER+ LE+EK DL + +KD
Sbjct: 159 LKEVAGTQIYENRRAESNKIMDETIQKSEKIDELLQYIEERLRELEEEKNDLA-VYHKKD 217
Query: 571 ME 566
E
Sbjct: 218 NE 219
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.18
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = -1
Query: 658 KRVCKDYHERIARLEDEKF--DLEYIVKRK-DMEISDLNSQVNDLRGKFVKPTLKKVSKY 488
+RV + Y E++A+ K ++E KRK + E+ + + K K+ +
Sbjct: 554 QRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613
Query: 487 ENKFAKLQKKAAE--FNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 317
+ +L ++AA+ + Q + KK+E + ++EKK + + ++K K++E E
Sbjct: 614 RREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -1
Query: 514 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 335
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W + +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590
Query: 334 KEEEV 320
+ +V
Sbjct: 591 QHSQV 595
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = -1
Query: 526 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 347
K K +++++ + ++ A +++K + ++ KK+ ++D+ K D K K G
Sbjct: 49 KMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH---KKDKPSADKDRISKKDKKKSKKG 105
Query: 346 DQKVKEEEVE 317
K KEE +E
Sbjct: 106 KSKTKEESIE 115
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.9 bits (64), Expect = 0.43
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Frame = -1
Query: 712 EERCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 533
E++ KP N +T + LE + L + ++KD +I +L ++NDL
Sbjct: 118 EDKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERINDL 177
Query: 532 RGKFVKPTLK-KVSKYENKFAKLQKK-AAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSK 359
+ TLK E K + K+ AA F+++L ++++ E E K D K
Sbjct: 178 TYDY--ETLKANADDSEGKQTLVSKREAALEEFQSKL-LIRENEINKRELKMNGKEDDLK 234
Query: 358 GKPGDQKVKEEEVE 317
+ D + + +VE
Sbjct: 235 KREKDLENRLLKVE 248
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 445 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 341
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.74
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -1
Query: 640 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 470
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 469 LQKKAAEF 446
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.74
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 487 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 317
+N F K E NF + +K K +FT E+K + K P +QK +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -1
Query: 658 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 485
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -1
Query: 580 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 404
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 403 TLEEEDKEKKPDWSKGKPGDQKVKEEEV 320
+++ + ++++ + K +KV ++ +
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKVNKDSL 1506
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 547 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 371
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 370 DWSKGKPGDQK 338
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 499 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 374
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 691 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 572
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 583 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 407
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 406 FTLEEEDKEKKPDWSKGKP 350
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/120 (18%), Positives = 50/120 (41%)
Frame = -1
Query: 733 LKGRRIIEERCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 554
+K R I EE+ + N + ++ + YHE + + + +DL + +
Sbjct: 626 VKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTKSNCKQM 685
Query: 553 NSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKK 374
++ LR + ++ + + +KL K+ + +NQ ++ K L E ++ K
Sbjct: 686 EEEMQVLR----EGHESEIKDFIEEHSKLTKQLDD--IKNQFGIISSKNRDLLSELEKSK 739
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 3.0
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Frame = -1
Query: 685 IDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRK-DMEISDLNSQVNDLRGKFVKPT 509
ID A E ++R + E +A++E E+ ++ +R D I + LR K K T
Sbjct: 42 IDPALERRLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQRLRKK--KQT 99
Query: 508 LKKV--SKYENKFAK-----LQKKAAEFN-FRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 353
++ V S Y ++ +K ++ ++ + K K K ++ D+ ++ DW K
Sbjct: 100 IQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLDWVSNK 159
Query: 352 PGDQKVK 332
P + V+
Sbjct: 160 PDKEHVE 166
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 421 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 317
++ E+ L++E+KE+K K + +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 463 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 341
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 670 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 539
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 593 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 715
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 640 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 542
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = -1
Query: 661 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYEN 482
+K + H ++ E + E K I + + ++ + K VK ++ + +
Sbjct: 376 LKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSS-KDKMVKQVSSQLEEARS 434
Query: 481 KFAKLQKKAAEFNFRNQLKVVKKKEFTLEEED 386
A K AE N + K K+F E+D
Sbjct: 435 SLAHATGKLAEINSERDFQNKKIKDFEKIEQD 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,853
Number of Sequences: 5004
Number of extensions: 57437
Number of successful extensions: 239
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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