Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a23f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    30   0.28 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   0.87 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    28   1.1  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   1.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   3.5  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   4.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 345  GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 512
            G    ID++  +++KR    Y  ++  ++     LE  ++R + EISD  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +3

Query: 387  KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 560
            +R+C+   + +   + + +DL++       E S L+ QVNDL  +  K T +K+S+ +
Sbjct: 897  QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 405 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 575
           +H+ +   +DE     Y++  K ME  +L+    QVN +  K +K     VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636

Query: 576 LQ 581
           L+
Sbjct: 637 LE 638


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 354 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 473
           +NI D++ED I ++   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 223 KPFFAFLALEASSMRLRTSARLRSISACL 137
           K FF  L  E+  +RL+T+  + S+  CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 375 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 506
           ED+ +    D+H   A  E+EK     + K   ME+ ++N  V+
Sbjct: 23  EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 452 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 330
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 405 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 503
           +HE I +L+D + +L   +++K++ IS L   V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 423 RLEDEKFDLE-YIVKRKDME-ISDLNSQVNDLRGKFV 527
           +LEDEKFD E Y+    D E I ++   + D  G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,566
Number of Sequences: 5004
Number of extensions: 27359
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)