Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12a23f
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 31 0.51
05_01_0545 - 4756266-4757510 31 0.67
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 2.0
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 2.0
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 29 2.7
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 29 3.6
08_02_1528 + 27666356-27667081 28 6.2
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 28 6.2
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 27 8.2
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 390 RVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 554
R+C E+IA +E E D+E I+ ++ ++ N + D+ K K+V +
Sbjct: 649 RLCTSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDIELKIKNLKRKRVEE 703
>05_01_0545 - 4756266-4757510
Length = 414
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 399 CKPS**YLRWRRQCS*VYRTSPR*CASFQ-QLYVPAP 292
C P+ Y R RQC+ Y P CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 387 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 515
K+ K+ ERIA+L+D ++L K + ++ + Q+ LR
Sbjct: 580 KKTEKELRERIAQLQDSNYELSGSSKAQAARMAQMEKQIEALR 622
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 366 DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 512
D ED K++ K + L D+K +E I+ K E+ ++S+VNDL
Sbjct: 99 DEKEDHEKQL-KQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDL 146
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 357 NIDDANED-TIKRVCKD-YHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 530
++ +ED + K + K+ Y E + R ED++F+L+ +++ + I + + ++ +K
Sbjct: 468 SVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVIVAIKRVEELIEKMQDNSIK 527
Query: 531 P 533
P
Sbjct: 528 P 528
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 411 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 521
+R+ R+ + KRK ++DL SQV+ LRG+
Sbjct: 124 KRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGE 160
>08_02_1528 + 27666356-27667081
Length = 241
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 393 VCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 554
+C E +++L+ +++ + KR+D + N Q K V+ KK+SK
Sbjct: 89 LCNSIQESVSKLKTSIQEMQLVHKRRDATVVQANIQYFIRLTKKVQKQSKKISK 142
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 378 DTIKRVCKDYHERIARLEDEKFDLEYIV-KRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 554
+T ++C+ Y E A + KFDL YIV R + S V +R + TL+K S
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIVFVRSICPLEIFLSDVFWVRLANNQYTLEKTSF 702
Query: 555 YE 560
+E
Sbjct: 703 FE 704
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 301 NVKLLKGGASSRRGAVNLRTLTTPT 375
N K KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,935,697
Number of Sequences: 37544
Number of extensions: 182372
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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