Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a21r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   6.7  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.9  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 450  YGIGNN*KTMFVHSCQHEFYVCCSLNIY 367
            Y  GNN + +FV  C H  ++ C  N Y
Sbjct: 1414 YPPGNNIRGVFVSGCGHLMHLGCFKNYY 1441


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 736 LPSSPLISTEPYCVIYRLHVIVKLF 662
           L S  L+   PYC    LHV +K+F
Sbjct: 361 LLSERLLDISPYCRTKVLHVFIKIF 385


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 553 DPLLNRLFCKCNYASVSNARISKSAATFLIKYDK 654
           DP+L  +   CN++S SNA+ S S     +  DK
Sbjct: 186 DPVLAPVIDLCNHSSKSNAKWSFSEDAMQLYLDK 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,815
Number of Sequences: 5004
Number of extensions: 60333
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)