Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a21f
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.012
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.012
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.47 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 155 AAGIFLWTLCRAHVPLPPTFAQ 90
           A GI  W LC  HV LP TF Q
Sbjct: 778 AFGILFWYLCAGHVRLPYTFEQ 799


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 155 AAGIFLWTLCRAHVPLPPTFAQ 90
           A GI  W LC  HV LP TF Q
Sbjct: 816 AFGILFWYLCAGHVRLPYTFEQ 837


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 541 RQTTMATENLLINYSSN 491
           R  TM  ENLL+NY +N
Sbjct: 35  RNITMVLENLLMNYENN 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 549 KSGDKPPWQQKIFSSIIAAI 490
           ++GDKPP     F +++A++
Sbjct: 159 RNGDKPPLTYHQFQTVVASM 178


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 600 SGTSVGRIILLICSIPCKSGD 538
           +G ++ R+I  +CS  CK  D
Sbjct: 230 TGCTITRVIPQVCSGNCKLND 250


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 179 PPTPVIWAAAGIFLWTL 129
           PP P++W   G  L TL
Sbjct: 338 PPPPLVWRRNGADLETL 354


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 600 SGTSVGRIILLICSIPCKSGD 538
           +G ++ R+I  +CS  CK  D
Sbjct: 230 TGCTITRVIPQVCSGNCKLND 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,645
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)