Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a20f
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +N  +SHQH W
Sbjct: 455 LNDFISHQHAW 465


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +N  +SHQH W
Sbjct: 455 LNDFISHQHAW 465


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +N  +SHQH W
Sbjct: 455 LNDFISHQHAW 465


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +N  +SHQH W
Sbjct: 455 LNDFISHQHAW 465


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 329 YNSRVIFFLPGALNPEL 379
           Y SR++F +  A+NP L
Sbjct: 336 YFSRIMFHINSAVNPIL 352


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +   LSHQH W
Sbjct: 209 LQDFLSHQHAW 219


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +   LSHQH W
Sbjct: 442 LQDFLSHQHAW 452


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 308 INKILSHQHIW 276
           +   LSHQH W
Sbjct: 442 LQDFLSHQHAW 452


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,461
Number of Sequences: 336
Number of extensions: 1053
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)