Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a20f
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50923| Best HMM Match : Sec6 (HMM E-Value=0.0068)                   33   0.14 
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.73 
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_50923| Best HMM Match : Sec6 (HMM E-Value=0.0068)
          Length = 312

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -2

Query: 405 EKEKKLHL*SSGFKAPGRKKITRELYFFVLES 310
           +K  +L L S+GFK PGR K  R+  F V+ES
Sbjct: 206 DKRAELRLSSTGFKVPGRPKRWRQKCFEVIES 237


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -2

Query: 195 PENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMR------KPGEQRRSSI 43
           P  +QST+++P  R  Q         L GT  S +  WLM       KPG QR   +
Sbjct: 131 PSRLQSTETSPRRRTRQVCVAWVTNGLAGTIKSRSGEWLMNGDHVVTKPGSQRTDGV 187


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 359  QAEKKSLANYTFLYWNQINKILSHQHIWFHEFRR 258
            +AEKK L+ +  L++++  K L   H+W   F R
Sbjct: 1300 KAEKKDLSGFRNLFYSRTAKSLGDGHLWLSLFTR 1333


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 189 NMQSTQS-TPGVRCTQQRPEQYMQQLQGTCSSPAEAWLMRKPGEQRRSSI 43
           ++ S++S   G   + QRP  Y Q+     +S    W+M KP   RR S+
Sbjct: 141 HVSSSESLVSGAAFSTQRPP-YKQKSLNALNSNDHGWVMEKPRHTRRESL 189


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = -3

Query: 380 EVQDLKRQAEKKSLANYTFLYWNQINKILSHQHIWFHEFRR 258
           E++     AEKK + ++  ++ +++++ L+  H+W   F R
Sbjct: 456 EIETEISAAEKKEIQSFKNVFHSRVSRSLADSHLWASVFMR 496


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 74  ESQESNEDQVFEHFDCLFSSSESD 3
           + Q+S EDQVF   D + SSS S+
Sbjct: 423 QRQDSKEDQVFRETDNVVSSSSSE 446


>SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 272 ETKYVDVIIFYLFDSNTKKYNSRVIFFLPGALNPELQR*SFFSFSEI 412
           E +Y+ +I+ Y      K+    +IF+ P  LNP ++     +F+++
Sbjct: 65  EPRYIGLILDYENKEGAKRSKVLLIFWCPENLNPRVKMPYAMTFNDL 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,364
Number of Sequences: 59808
Number of extensions: 111085
Number of successful extensions: 271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)