Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12a18f
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    64   5e-11
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    31   0.39 
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    29   2.1  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   4.8  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   6.3  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    27   6.3  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    27   6.3  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 47/123 (38%), Positives = 67/123 (54%)
 Frame = +3

Query: 72  MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 251
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 252 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 431
           G  V  K  K   +PAK +        ++  +  V+RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 432 RSQ 440
           RSQ
Sbjct: 113 RSQ 115


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 26  CEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 172
           CEH+   + I   R+N+++ ELD +  QQ I   EA Y   +++  E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 257 ESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 120
           E+ PV+V ++ NS  V   +V   +EVSH   +  E    I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 169 LFGSLLNGFLILRFFTRNALLLRMIIQFS 83
           L  SL+NG  I  FF  N LL  +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 211
           ++ +D  Q    PCE  QYQK   +    C  PP + V + D+
Sbjct: 59  SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 269
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 269
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 153 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 269
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = -1

Query: 329 SLEWTAD*VFSGLSGSLCFLVHYCESLPVRVLHDTNSFLVNQAVVPE----GVEVSHIVR 162
           +L W+ D     + G+   LV +   +  R+ ++    +  Q  V E      EVS    
Sbjct: 272 ALSWSPDGTQLAV-GTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETL 330

Query: 161 LLAERLFDIALLHKECIVVADDHPVQ*RRHFYGLNLFLHQTQRAHNVCVDKKK 3
              ER+  IA+L+K  IVV   H        +     +   +R  N+ V  +K
Sbjct: 331 ETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = -1

Query: 329 SLEWTAD*VFSGLSGSLCFLVHYCESLPVRVLHDTNSFLVNQAVVPE----GVEVSHIVR 162
           +L W+ D     + G+   LV +   +  R+ ++    +  Q  V E      EVS    
Sbjct: 272 ALSWSPDGTQLAV-GTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETL 330

Query: 161 LLAERLFDIALLHKECIVVADDHPVQ*RRHFYGLNLFLHQTQRAHNVCVDKKK 3
              ER+  IA+L+K  IVV   H        +     +   +R  N+ V  +K
Sbjct: 331 ETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEK 383


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 382 TAQTYARLPFVVLQPSSAPRGPLKQKRLRQPQPS 483
           T Q +A +P  V  PS+ P GPL Q   + P P+
Sbjct: 113 TPQQFAAVPQSVQAPSATPAGPL-QAMQQAPAPT 145


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 145 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 44
           +L +RFF  N L+  M ++  DDDI    T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,660
Number of Sequences: 27780
Number of extensions: 252616
Number of successful extensions: 619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)